Genome ID：GCA_029350925.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
12	12	13	21.38

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
JDODOENI_110	634705	635043	ykkC	ARO:3003063	ykkC	100.00	100.00	AL009126.1
JDODOENI_110	634388	634705	ykkD	ARO:3003064	ykkD	99.05	100.00	AL009126.1
JDODOENI_332	563365	564219	aadK	ARO:3002627	aadK	98.24	100.00	AL009126.1
JDODOENI_332	544783	545985	blt	ARO:3003006	blt	99.25	100.00	L32599.1
JDODOENI_332	347807	348976	bmr	ARO:3003007	bmr	99.74	100.00	M33768.1
JDODOENI_364	343230	344150	mphK	ARO:3004541	mphK	99.35	100.00	CP010314.1
JDODOENI_364	329908	331341	lmrB	ARO:3002813	lmrB	99.58	100.00	JYFL01000006.1
JDODOENI_375	296322	298892	Bacillus subtilis mprF	ARO:3003324	Bsub_mprF	99.77	100.00	AL009126.3
JDODOENI_364	29094	30737	vmlR	ARO:3004476	vmlR	98.90	100.00	NC_000964.3
JDODOENI_254	548	733	rsmA	ARO:3005069	rsmA	85.25	100.00	AF061757.1

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
JDODOENI_364	343230	344150	mph(K)	Spiramycin, Telithromycin	99.46	100.00	NC_000964
JDODOENI_332	563365	564219	aadK	Streptomycin	98.71	100.00	M26879

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
JDODOENI_364	343233	344150	mphK	macrolide 2'-phosphotransferase MphK	BLASTX	99.35	100.00	WP_003246254.1
JDODOENI_364	29094	30734	vmlR	ABC-F type ribosomal protection protein VmlR	BLASTX	98.90	100.00	WP_003234144.1
JDODOENI_332	563368	564219	aadK	aminoglycoside 6-adenylyltransferase AadK	BLASTX	98.24	100.00	WP_003229862.1
JDODOENI_221	42990	43508	satA	streptothricin N-acetyltransferase SatA	BLASTX	93.06	100.00	WP_003242546.1
JDODOENI_332	54132	56729	rphC	rifamycin-inactivating phosphotransferase RphC	BLASTX	80.30	100.00	WP_087347987.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
JDODOENI_221	543587	544768	capB	0.0	Capsule	Immune modulation	99.75	100.00	NP_391471
JDODOENI_332	150480	151121	hlyIII	0.0	Hemolysin III	Exotoxin	99.69	100.00	NP_390062
JDODOENI_221	946196	946981	dhbA	0.0	Bacillibactin	Nutritional/Metabolic factor	99.49	100.00	NP_391080
JDODOENI_221	947007	948203	dhbC	0.0	Bacillibactin	Nutritional/Metabolic factor	99.33	100.00	NP_391079
JDODOENI_221	545251	546393	capA	0.0	Capsule	Immune modulation	99.12	100.00	NP_391469
JDODOENI_332	8385	10148	dep/capD	0.0	Capsule	Immune modulation	99.04	100.00	NP_389723
JDODOENI_221	544783	545232	capC	0.0	Capsule	Immune modulation	98.67	100.00	NP_391470
JDODOENI_221	949879	950817	dhbB	0.0	Bacillibactin	Nutritional/Metabolic factor	98.62	100.00	NP_391077
JDODOENI_221	950837	957973	dhbF	0.0	Bacillibactin	Nutritional/Metabolic factor	98.52	100.00	NP_391076
JDODOENI_221	948232	949851	dhbE	0.0	Bacillibactin	Nutritional/Metabolic factor	96.97	100.00	NP_391078
JDODOENI_403	79	554	fimA	0.0	Type 1 fimbriae	Adherence	90.78	86.52	WP_000695554
JDODOENI_331	3	413	fliJ	1.13e-180	Peritrichous flagella	Motility	94.42	92.34	WP_000807584
JDODOENI_308	1	441	EC958_RS02630	1.47e-157	SCI-I T6SS	Effector delivery system	89.44	65.62	WP_022645036
JDODOENI_308	1	441	EC958_RS02625	1.48e-152	SCI-I T6SS	Effector delivery system	88.81	65.47	WP_000704501

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
JDODOENI_408	28042	26906	tufA	0.0	elongation factor Tu	84.96	95.69	AHM69299
JDODOENI_11	4392	5261	pdxS	1.12e-151	encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS	83.79	98.31	ACE61268
JDODOENI_110	323195	322419	CodY	8.60e-125	nutrient-responsive regulator	81.08	100.00	ACJ80679
JDODOENI_403	570	82	fimA	1.14e-111	type-1 fimbrial protein, A chain	96.32	88.59	AF286465_1
JDODOENI_221	686234	685665	ClpP	6.37e-99	part of proteolytic complex	81.05	97.44	BAB94595
JDODOENI_271	1	435	leuD	1.31e-91	3-isopropylmalate dehydratase small subunit	85.52	72.14	AIT01850
JDODOENI_110	785210	784818	spxA1	6.76e-70	redox-responsive transcription factor	83.97	100.00	AAF21893
JDODOENI_110	785210	784818	spx	4.03e-68	essential gene which is a thiol/oxidative stress sensor	80.15	100.00	BAB57159
JDODOENI_378	61	357	ihfA	2.33e-66	integration host factor	98.99	100.00	ACI10637
JDODOENI_419	20607	20849	SpoVG	7.52e-39	RNA-binding protein	81.48	79.41	AAT02994
JDODOENI_254	548	712	csrA	1.21e-31	post-transcriptional regulator	100.00	90.16	AAA71919
JDODOENI_364	77080	76883	CspA	1.88e-31	cold shock protein	90.91	100.00	CAA62903
JDODOENI_254	548	712	RsmA	1.06e-30	carbon storage regulator homolog	98.18	90.16	AAA74502
JDODOENI_254	548	712	CsrA	2.44e-30	small RNA-binding protein involved in the regulation of a wide range of cellular processes.	98.18	84.62	AAF93716
JDODOENI_332	162351	162545	CspD	1.87e-27	cold shock protein	80.00	98.48	CAC99957
JDODOENI_332	162351	162548	CspB	3.88e-27	cold shock protein	80.30	100.00	CAD00094
JDODOENI_254	548	703	rsmAXoo	1.69e-26	RNA-binding protein	90.39	74.29	HM988729
JDODOENI_25	390	473	RyhB	2.16e-12	small regulatory noncoding RNA	100.00	100.00	AIX62431
JDODOENI_411	1	564	napH	7.75e-122	ferredoxin-type protein	98.40	65.51	AAC75264