Genome ID:GCA_029350965.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 2 | 7 | 7.35 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DDCMJOMI_43 | 388586 | 389962 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 87.07 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DDCMJOMI_43 | 388586 | 389956 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.21 | 99.78 | WP_003242953.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| DDCMJOMI_53 | 507383 | 508253 | capB | 0.0 | Capsule | Immune modulation | 82.80 | 73.60 | NP_391471 |
| DDCMJOMI_53 | 508462 | 508911 | capC | 2.74e-114 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DDCMJOMI_125 | 28154 | 27018 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| DDCMJOMI_22 | 4359 | 5228 | pdxS | 1.36e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| DDCMJOMI_64 | 486433 | 485657 | CodY | 7.12e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| DDCMJOMI_93 | 255038 | 255430 | spxA1 | 6.45e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| DDCMJOMI_73 | 81398 | 81201 | CspA | 2.50e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| DDCMJOMI_93 | 39441 | 39247 | CspB | 6.14e-27 | cold shock protein | 84.61 | 98.48 | CAD00094 |
| DDCMJOMI_73 | 81398 | 81204 | CspR | 3.27e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| DDCMJOMI_104 | 157083 | 157955 | lipA (SAUSA300_0829) | 9.48e-163 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |