Genome ID：GCA_029536895.2

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
13	10	4	16.88

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
PNCHODLH_1	2621330	2622184	aadK	ARO:3002627	aadK	100.00	100.00	AL009126.1
PNCHODLH_1	2602621	2603823	blt	ARO:3003006	blt	100.00	100.00	L32599.1
PNCHODLH_1	2380301	2381470	bmr	ARO:3003007	bmr	99.74	100.00	M33768.1
PNCHODLH_1	1355940	1356257	ykkD	ARO:3003064	ykkD	100.00	100.00	AL009126.1
PNCHODLH_1	1355602	1355940	ykkC	ARO:3003063	ykkC	100.00	100.00	AL009126.1
PNCHODLH_1	895859	898429	Bacillus subtilis mprF	ARO:3003324	Bsub_mprF	100.00	100.00	AL009126.3
PNCHODLH_1	583817	585460	vmlR	ARO:3004476	vmlR	100.00	100.00	NC_000964.3
PNCHODLH_1	338754	339347	tmrB	ARO:3003059	tmrB	100.00	100.00	AL009126.3
PNCHODLH_1	288251	289684	lmrB	ARO:3002813	lmrB	100.00	100.00	JYFL01000006.1
PNCHODLH_1	275436	276356	mphK	ARO:3004541	mphK	100.00	100.00	CP010314.1

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
PNCHODLH_1	2621330	2622184	aadK	Streptomycin	100.00	100.00	M26879
PNCHODLH_1	275436	276356	mph(K)	Spiramycin, Telithromycin	100.00	100.00	NC_000964
PNCHODLH_1	4112172	4113548	tet(L)	Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline	100.00	100.00	X08034

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
PNCHODLH_1	2621333	2622184	aadK	aminoglycoside 6-adenylyltransferase AadK	EXACTX	100.00	100.00	WP_003229862.1
PNCHODLH_1	275436	276353	mphK	macrolide 2'-phosphotransferase MphK	EXACTX	100.00	100.00	WP_003246254.1
PNCHODLH_1	4109654	4110172	satA	streptothricin N-acetyltransferase SatA	EXACTX	100.00	100.00	WP_003242546.1
PNCHODLH_1	4112175	4113548	tet(L)	tetracycline efflux MFS transporter Tet(L)	EXACTX	100.00	100.00	WP_003242953.1
PNCHODLH_1	583820	585460	vmlR	ABC-F type ribosomal protection protein VmlR	EXACTX	100.00	100.00	WP_003234144.1
PNCHODLH_1	2071390	2073984	rphC	rifamycin-inactivating phosphotransferase RphC	BLASTX	81.15	99.88	WP_087347987.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
PNCHODLH_1	3622314	3623456	capA	0.0	Capsule	Immune modulation	100.00	100.00	NP_391469
PNCHODLH_1	3623939	3625120	capB	0.0	Capsule	Immune modulation	100.00	100.00	NP_391471
PNCHODLH_1	3623475	3623924	capC	0.0	Capsule	Immune modulation	100.00	100.00	NP_391470
PNCHODLH_1	2024732	2026495	dep/capD	0.0	Capsule	Immune modulation	100.00	100.00	NP_389723
PNCHODLH_1	3215980	3216765	dhbA	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391080
PNCHODLH_1	3212144	3213082	dhbB	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391077
PNCHODLH_1	3214758	3215954	dhbC	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391079
PNCHODLH_1	3213110	3214729	dhbE	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391078
PNCHODLH_1	3204988	3212124	dhbF	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391076
PNCHODLH_1	2180956	2181597	hlyIII	0.0	Hemolysin III	Exotoxin	100.00	100.00	NP_390062

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
PNCHODLH_1	132473	133609	tufA	0.0	elongation factor Tu	84.96	95.69	AHM69299
PNCHODLH_1	18665	19534	pdxS	3.08e-149	encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS	83.79	98.31	ACE61268
PNCHODLH_1	1669198	1669974	CodY	3.36e-124	nutrient-responsive regulator	81.08	100.00	ACJ80679
PNCHODLH_1	3470703	3471272	ClpP	2.49e-98	part of proteolytic complex	81.05	97.44	BAB94595