Genome ID:GCA_029625925.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 13 | 10 | 9 | 18.71 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DDJNBHIH_11 | 629865 | 631034 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| DDJNBHIH_11 | 455546 | 456748 | blt | ARO:3003006 | blt | 100.00 | 100.00 | L32599.1 |
| DDJNBHIH_11 | 437185 | 438039 | aadK | ARO:3002627 | aadK | 100.00 | 100.00 | AL009126.1 |
| DDJNBHIH_44 | 279658 | 280578 | mphK | ARO:3004541 | mphK | 100.00 | 100.00 | CP010314.1 |
| DDJNBHIH_44 | 266324 | 267763 | lmrB | ARO:3002813 | lmrB | 99.79 | 100.42 | JYFL01000006.1 |
| DDJNBHIH_44 | 216667 | 217260 | tmrB | ARO:3003059 | tmrB | 100.00 | 100.00 | AL009126.3 |
| DDJNBHIH_22 | 116759 | 117097 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| DDJNBHIH_22 | 116442 | 116759 | ykkD | ARO:3003064 | ykkD | 100.00 | 100.00 | AL009126.1 |
| DDJNBHIH_47 | 96167 | 98737 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 100.00 | 100.00 | AL009126.3 |
| DDJNBHIH_3 | 47432 | 49075 | vmlR | ARO:3004476 | vmlR | 100.00 | 100.00 | NC_000964.3 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DDJNBHIH_11 | 437185 | 438039 | aadK | Streptomycin | 100.00 | 100.00 | M26879 |
| DDJNBHIH_44 | 279658 | 280578 | mph(K) | Spiramycin, Telithromycin | 100.00 | 100.00 | NC_000964 |
| DDJNBHIH_8 | 36288 | 37664 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 100.00 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DDJNBHIH_11 | 437185 | 438036 | aadK | aminoglycoside 6-adenylyltransferase AadK | EXACTX | 100.00 | 100.00 | WP_003229862.1 |
| DDJNBHIH_44 | 279661 | 280578 | mphK | macrolide 2'-phosphotransferase MphK | EXACTX | 100.00 | 100.00 | WP_003246254.1 |
| DDJNBHIH_8 | 39664 | 40182 | satA | streptothricin N-acetyltransferase SatA | EXACTX | 100.00 | 100.00 | WP_003242546.1 |
| DDJNBHIH_8 | 36288 | 37661 | tet(L) | tetracycline efflux MFS transporter Tet(L) | EXACTX | 100.00 | 100.00 | WP_003242953.1 |
| DDJNBHIH_3 | 47435 | 49075 | vmlR | ABC-F type ribosomal protection protein VmlR | EXACTX | 100.00 | 100.00 | WP_003234144.1 |
| DDJNBHIH_5 | 13853 | 16447 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 81.15 | 99.88 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| DDJNBHIH_43 | 427211 | 428353 | capA | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | NP_391469 |
| DDJNBHIH_43 | 425547 | 426728 | capB | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | NP_391471 |
| DDJNBHIH_43 | 426743 | 427192 | capC | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | NP_391470 |
| DDJNBHIH_5 | 61342 | 63105 | dep/capD | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | NP_389723 |
| DDJNBHIH_45 | 174684 | 175469 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 100.00 | 100.00 | NP_391080 |
| DDJNBHIH_45 | 178367 | 179305 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 100.00 | 100.00 | NP_391077 |
| DDJNBHIH_45 | 175495 | 176691 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 100.00 | 100.00 | NP_391079 |
| DDJNBHIH_45 | 176720 | 178339 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 100.00 | 100.00 | NP_391078 |
| DDJNBHIH_45 | 179325 | 186461 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 100.00 | 100.00 | NP_391076 |
| DDJNBHIH_11 | 829740 | 830381 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 100.00 | 100.00 | NP_390062 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DDJNBHIH_7 | 31733 | 32869 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| DDJNBHIH_15 | 4308 | 5177 | pdxS | 1.11e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| DDJNBHIH_33 | 278446 | 277670 | CodY | 3.85e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| DDJNBHIH_46 | 121141 | 120572 | ClpP | 1.20e-99 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| DDJNBHIH_22 | 265920 | 265528 | spxA1 | 1.30e-69 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| DDJNBHIH_10 | 10451 | 10693 | SpoVG | 6.13e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| DDJNBHIH_3 | 1960 | 2157 | CspA | 3.36e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| DDJNBHIH_11 | 817778 | 817584 | CspD | 5.68e-28 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| DDJNBHIH_22 | 509154 | 509348 | CspB | 4.96e-27 | cold shock protein | 83.08 | 98.48 | CAD00094 |