Genome ID:GCA_029762095.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 10 | 3 | 11.18 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HDILNOAP_1 | 3836198 | 3837001 | mphK | ARO:3004541 | mphK | 96.08 | 87.25 | CP010314.1 |
| HDILNOAP_1 | 3540302 | 3541927 | vmlR | ARO:3004476 | vmlR | 95.93 | 98.90 | NC_000964.3 |
| HDILNOAP_1 | 2722629 | 2722967 | ykkC | ARO:3003063 | ykkC | 99.11 | 100.00 | AL009126.1 |
| HDILNOAP_1 | 2722312 | 2722629 | ykkD | ARO:3003064 | ykkD | 97.14 | 100.00 | AL009126.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HDILNOAP_1 | 3836198 | 3837118 | mph(K) | Spiramycin, Telithromycin | 97.40 | 99.89 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HDILNOAP_1 | 3540302 | 3541924 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 95.93 | 98.90 | WP_003234144.1 |
| HDILNOAP_1 | 3836201 | 3837118 | mphK | macrolide 2'-phosphotransferase MphK | INTERNAL_STOP | 86.27 | 100.00 | WP_003246254.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| HDILNOAP_1 | 616058 | 617239 | capB | 0.0 | Capsule | Immune modulation | 99.41 | 100.00 | NP_391471 |
| HDILNOAP_1 | 2025267 | 2025909 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.22 | 100.00 | NP_390062 |
| HDILNOAP_1 | 1025775 | 1026713 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.15 | 100.00 | NP_391077 |
| HDILNOAP_1 | 2189154 | 2190918 | dep/capD | 0.0 | Capsule | Immune modulation | 98.92 | 100.00 | NP_389723 |
| HDILNOAP_1 | 1022901 | 1024097 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.83 | 100.00 | NP_391079 |
| HDILNOAP_1 | 1024126 | 1025747 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.83 | 100.00 | NP_391078 |
| HDILNOAP_1 | 1022090 | 1022875 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.60 | 100.00 | NP_391080 |
| HDILNOAP_1 | 617254 | 617703 | capC | 0.0 | Capsule | Immune modulation | 98.22 | 100.00 | NP_391470 |
| HDILNOAP_1 | 1026732 | 1033877 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.65 | 99.99 | NP_391076 |
| HDILNOAP_1 | 617722 | 618846 | capA | 0.0 | Capsule | Immune modulation | 96.76 | 99.83 | NP_391469 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HDILNOAP_1 | 82238 | 81369 | pdxS | 4.56e-155 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 82.76 | 98.31 | ACE61268 |
| HDILNOAP_1 | 509834 | 510583 | FbaA | 3.84e-130 | fructose-bisphosphate aldolase | 80.40 | 87.41 | BAB43211 |
| HDILNOAP_1 | 2394722 | 2393946 | CodY | 6.51e-122 | nutrient-responsive regulator | 80.31 | 100.00 | ACJ80679 |
| HDILNOAP_1 | 3978154 | 3977357 | tufA | 1.32e-164 | elongation factor Tu | 82.33 | 67.01 | AHM69299 |
| HDILNOAP_1 | 994351 | 994938 | lipA (SAUSA300_0829) | 3.38e-105 | lipoic acid synthetase | 81.12 | 64.26 | ABD22039 |