Genome ID:GCA_029857115.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 10 | 6 | 12.33 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NEJECHEI_2 | 702093 | 703718 | vmlR | ARO:3004476 | vmlR | 94.82 | 98.90 | NC_000964.3 |
| NEJECHEI_1 | 111638 | 111976 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NEJECHEI_2 | 971690 | 972612 | mph(K) | Spiramycin, Telithromycin | 97.72 | 100.00 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NEJECHEI_2 | 702093 | 703715 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 94.82 | 98.90 | WP_003234144.1 |
| NEJECHEI_2 | 1272985 | 1273356 | satA | streptothricin N-acetyltransferase SatA | PARTIALX | 91.13 | 71.68 | WP_003242546.1 |
| NEJECHEI_2 | 971904 | 972455 | mphK | macrolide 2'-phosphotransferase MphK | PARTIALX | 96.74 | 60.13 | WP_003246254.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| NEJECHEI_7 | 300516 | 301699 | capB | 0.0 | Capsule | Immune modulation | 99.49 | 100.00 | NP_391471 |
| NEJECHEI_3 | 660741 | 661383 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.07 | 100.00 | NP_390062 |
| NEJECHEI_7 | 748144 | 749083 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.94 | 100.00 | NP_391077 |
| NEJECHEI_5 | 280935 | 282700 | dep/capD | 0.0 | Capsule | Immune modulation | 98.92 | 100.00 | NP_389723 |
| NEJECHEI_7 | 302183 | 303325 | capA | 0.0 | Capsule | Immune modulation | 98.78 | 100.00 | NP_391469 |
| NEJECHEI_7 | 301714 | 302164 | capC | 0.0 | Capsule | Immune modulation | 98.67 | 100.00 | NP_391470 |
| NEJECHEI_7 | 744461 | 745249 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.61 | 99.87 | NP_391080 |
| NEJECHEI_7 | 745275 | 746471 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.25 | 100.00 | NP_391079 |
| NEJECHEI_7 | 749103 | 756244 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.93 | 99.96 | NP_391076 |
| NEJECHEI_7 | 746489 | 748116 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.67 | 100.19 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NEJECHEI_2 | 1221342 | 1220692 | pdxS | 5.46e-128 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 86.64 | 73.56 | ACE61268 |
| NEJECHEI_5 | 35815 | 36591 | CodY | 2.38e-124 | nutrient-responsive regulator | 80.69 | 100.00 | ACJ80679 |
| NEJECHEI_2 | 107397 | 107005 | spxA1 | 6.57e-69 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| NEJECHEI_2 | 1184448 | 1184206 | SpoVG | 1.96e-37 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| NEJECHEI_2 | 726411 | 726214 | CspA | 6.23e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| NEJECHEI_3 | 649500 | 649306 | CspD | 4.82e-28 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| NEJECHEI_2 | 1112821 | 1112012 | tufA | 2.78e-164 | elongation factor Tu | 86.30 | 68.27 | AHM69299 |