Genome ID:GCA_029916985.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 13 | 10 | 4 | 16.88 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NCDGMBDA_1 | 2592779 | 2593633 | aadK | ARO:3002627 | aadK | 97.54 | 100.00 | AL009126.1 |
| NCDGMBDA_1 | 2573611 | 2574813 | blt | ARO:3003006 | blt | 99.75 | 100.00 | L32599.1 |
| NCDGMBDA_1 | 2351268 | 2352437 | bmr | ARO:3003007 | bmr | 99.23 | 100.00 | M33768.1 |
| NCDGMBDA_1 | 1356086 | 1356403 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| NCDGMBDA_1 | 1355748 | 1356086 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| NCDGMBDA_1 | 892714 | 895284 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.88 | 100.00 | AL009126.3 |
| NCDGMBDA_1 | 590280 | 591923 | vmlR | ARO:3004476 | vmlR | 98.35 | 100.00 | NC_000964.3 |
| NCDGMBDA_1 | 337280 | 337873 | tmrB | ARO:3003059 | tmrB | 98.48 | 100.00 | AL009126.3 |
| NCDGMBDA_1 | 286758 | 288191 | lmrB | ARO:3002813 | lmrB | 99.37 | 100.00 | JYFL01000006.1 |
| NCDGMBDA_1 | 273942 | 274862 | mphK | ARO:3004541 | mphK | 97.71 | 100.00 | CP010314.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NCDGMBDA_1 | 4057677 | 4059053 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 100.00 | 100.00 | X08034 |
| NCDGMBDA_1 | 2592781 | 2593633 | aadK | Streptomycin | 98.48 | 99.77 | M26879 |
| NCDGMBDA_1 | 273942 | 274862 | mph(K) | Spiramycin, Telithromycin | 97.50 | 100.00 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NCDGMBDA_1 | 4057680 | 4059053 | tet(L) | tetracycline efflux MFS transporter Tet(L) | EXACTX | 100.00 | 100.00 | WP_003242953.1 |
| NCDGMBDA_1 | 590283 | 591923 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.35 | 100.00 | WP_003234144.1 |
| NCDGMBDA_1 | 273942 | 274859 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 97.71 | 100.00 | WP_003246254.1 |
| NCDGMBDA_1 | 2592782 | 2593633 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 97.54 | 100.00 | WP_003229862.1 |
| NCDGMBDA_1 | 4055218 | 4055736 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.17 | 100.00 | WP_003242546.1 |
| NCDGMBDA_1 | 2047291 | 2049888 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 81.40 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| NCDGMBDA_1 | 3571892 | 3573073 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| NCDGMBDA_1 | 1997266 | 1999029 | dep/capD | 0.0 | Capsule | Immune modulation | 99.49 | 100.00 | NP_389723 |
| NCDGMBDA_1 | 2151861 | 2152502 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.38 | 100.00 | NP_390062 |
| NCDGMBDA_1 | 3157389 | 3158174 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.36 | 100.00 | NP_391080 |
| NCDGMBDA_1 | 3153553 | 3154491 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.36 | 100.00 | NP_391077 |
| NCDGMBDA_1 | 3156167 | 3157363 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.17 | 100.00 | NP_391079 |
| NCDGMBDA_1 | 3146399 | 3153533 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.06 | 99.97 | NP_391076 |
| NCDGMBDA_1 | 3570267 | 3571409 | capA | 0.0 | Capsule | Immune modulation | 98.86 | 100.00 | NP_391469 |
| NCDGMBDA_1 | 3154519 | 3156138 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.52 | 100.00 | NP_391078 |
| NCDGMBDA_1 | 3571428 | 3571877 | capC | 0.0 | Capsule | Immune modulation | 98.44 | 100.00 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NCDGMBDA_1 | 132399 | 133535 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| NCDGMBDA_1 | 18665 | 19534 | pdxS | 7.03e-149 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.45 | 98.31 | ACE61268 |
| NCDGMBDA_1 | 1665983 | 1666759 | CodY | 3.31e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| NCDGMBDA_1 | 3410538 | 3411107 | ClpP | 2.46e-98 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |