Genome ID:GCA_030028395.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 11 | 10 | 4 | 15.39 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PDAMAKEP_1 | 3681622 | 3681939 | ykkD | ARO:3003064 | ykkD | 98.10 | 100.00 | AL009126.1 |
| PDAMAKEP_1 | 3681284 | 3681622 | ykkC | ARO:3003063 | ykkC | 99.11 | 100.00 | AL009126.1 |
| PDAMAKEP_1 | 3200712 | 3203282 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.77 | 100.00 | AL009126.3 |
| PDAMAKEP_1 | 2651827 | 2652420 | tmrB | ARO:3003059 | tmrB | 97.46 | 100.00 | AL009126.3 |
| PDAMAKEP_1 | 2603912 | 2605345 | lmrB | ARO:3002813 | lmrB | 98.74 | 100.00 | JYFL01000006.1 |
| PDAMAKEP_1 | 687792 | 688646 | aadK | ARO:3002627 | aadK | 97.89 | 100.00 | AL009126.1 |
| PDAMAKEP_1 | 666240 | 667442 | blt | ARO:3003006 | blt | 99.75 | 100.00 | L32599.1 |
| PDAMAKEP_1 | 439367 | 440536 | bmr | ARO:3003007 | bmr | 99.49 | 100.00 | M33768.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PDAMAKEP_1 | 687794 | 688646 | aadK | Streptomycin | 98.48 | 99.77 | M26879 |
| PDAMAKEP_1 | 2573426 | 2574345 | mph(K) | Spiramycin, Telithromycin | 97.61 | 99.89 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PDAMAKEP_1 | 687795 | 688646 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 97.89 | 100.00 | WP_003229862.1 |
| PDAMAKEP_1 | 2898077 | 2899717 | vmlR | ABC-F type ribosomal protection protein VmlR | INTERNAL_STOP | 97.81 | 100.00 | WP_003234144.1 |
| PDAMAKEP_1 | 2236811 | 2237203 | satA | streptothricin N-acetyltransferase SatA | PARTIALX | 93.13 | 75.72 | WP_003242546.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| PDAMAKEP_1 | 1743696 | 1744877 | capB | 0.0 | Capsule | Immune modulation | 99.58 | 100.00 | NP_391471 |
| PDAMAKEP_1 | 1290910 | 1291848 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.57 | 100.00 | NP_391077 |
| PDAMAKEP_1 | 1742071 | 1743213 | capA | 0.0 | Capsule | Immune modulation | 99.56 | 100.00 | NP_391469 |
| PDAMAKEP_1 | 1743232 | 1743681 | capC | 0.0 | Capsule | Immune modulation | 99.56 | 100.00 | NP_391470 |
| PDAMAKEP_1 | 235250 | 235891 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.53 | 100.00 | NP_390062 |
| PDAMAKEP_1 | 105038 | 106801 | dep/capD | 0.0 | Capsule | Immune modulation | 99.38 | 100.00 | NP_389723 |
| PDAMAKEP_1 | 1294735 | 1295520 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.24 | 100.00 | NP_391080 |
| PDAMAKEP_1 | 1283754 | 1290890 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.03 | 100.00 | NP_391076 |
| PDAMAKEP_1 | 1293513 | 1294709 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.58 | 100.00 | NP_391079 |
| PDAMAKEP_1 | 1291876 | 1293495 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.78 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PDAMAKEP_1 | 2396283 | 2397419 | tufA | 0.0 | elongation factor Tu | 85.75 | 95.69 | AHM69299 |
| PDAMAKEP_1 | 2280952 | 2281821 | pdxS | 6.85e-149 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.45 | 98.31 | ACE61268 |
| PDAMAKEP_1 | 3994608 | 3995384 | CodY | 3.45e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| PDAMAKEP_1 | 1592134 | 1592703 | ClpP | 2.56e-98 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |