Genome ID:GCA_030223505.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 12 | 9 | 9 | 17.49 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NNMJCPGC_77 | 149561 | 150763 | blt | ARO:3003006 | blt | 99.75 | 100.00 | L32599.1 |
| NNMJCPGC_77 | 131176 | 132030 | aadK | ARO:3002627 | aadK | 97.89 | 100.00 | AL009126.1 |
| NNMJCPGC_2 | 100706 | 101875 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| NNMJCPGC_7 | 64011 | 65639 | vmlR | ARO:3004476 | vmlR | 98.34 | 99.09 | NC_000964.3 |
| NNMJCPGC_20 | 52518 | 53957 | lmrB | ARO:3002813 | lmrB | 98.74 | 100.42 | JYFL01000006.1 |
| NNMJCPGC_26 | 42267 | 42584 | ykkD | ARO:3003064 | ykkD | 98.10 | 100.00 | AL009126.1 |
| NNMJCPGC_26 | 41929 | 42267 | ykkC | ARO:3003063 | ykkC | 97.32 | 100.00 | AL009126.1 |
| NNMJCPGC_20 | 39705 | 40625 | mphK | ARO:3004541 | mphK | 98.37 | 100.00 | CP010314.1 |
| NNMJCPGC_16 | 9403 | 11973 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.65 | 100.00 | AL009126.3 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NNMJCPGC_4 | 77262 | 78638 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.27 | 100.00 | X08034 |
| NNMJCPGC_77 | 131176 | 132028 | aadK | Streptomycin | 98.59 | 99.77 | M26879 |
| NNMJCPGC_20 | 39705 | 40625 | mph(K) | Spiramycin, Telithromycin | 97.72 | 100.00 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NNMJCPGC_4 | 77265 | 78638 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.91 | 100.00 | WP_003242953.1 |
| NNMJCPGC_20 | 39705 | 40622 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 98.37 | 100.00 | WP_003246254.1 |
| NNMJCPGC_7 | 64014 | 65639 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.34 | 98.90 | WP_003234144.1 |
| NNMJCPGC_77 | 131176 | 132027 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 97.89 | 100.00 | WP_003229862.1 |
| NNMJCPGC_4 | 74763 | 75281 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.17 | 100.00 | WP_003242546.1 |
| NNMJCPGC_3 | 106871 | 109468 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.71 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| NNMJCPGC_34 | 1660 | 2802 | capA | 0.0 | Capsule | Immune modulation | 99.65 | 100.00 | NP_391469 |
| NNMJCPGC_33 | 162552 | 163193 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.53 | 100.00 | NP_390062 |
| NNMJCPGC_55 | 103512 | 104297 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.49 | 100.00 | NP_391080 |
| NNMJCPGC_34 | 2821 | 3270 | capC | 0.0 | Capsule | Immune modulation | 99.33 | 100.00 | NP_391470 |
| NNMJCPGC_3 | 57798 | 59561 | dep/capD | 0.0 | Capsule | Immune modulation | 99.21 | 100.00 | NP_389723 |
| NNMJCPGC_55 | 100642 | 102261 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.64 | 100.00 | NP_391078 |
| NNMJCPGC_55 | 92529 | 99656 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.22 | 99.99 | NP_391076 |
| NNMJCPGC_55 | 99676 | 100614 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.08 | 100.00 | NP_391077 |
| NNMJCPGC_55 | 102290 | 103486 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.00 | 100.00 | NP_391079 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NNMJCPGC_19 | 28041 | 26905 | tufA | 0.0 | elongation factor Tu | 85.75 | 95.69 | AHM69299 |
| NNMJCPGC_38 | 11246 | 10377 | pdxS | 1.11e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| NNMJCPGC_11 | 218584 | 219360 | CodY | 2.72e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| NNMJCPGC_88 | 125112 | 125681 | ClpP | 9.30e-100 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| NNMJCPGC_14 | 38996 | 38604 | spxA1 | 5.03e-71 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| NNMJCPGC_14 | 38996 | 38604 | spx | 3.00e-69 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| NNMJCPGC_23 | 34655 | 34413 | SpoVG | 7.50e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| NNMJCPGC_7 | 6739 | 6936 | CspA | 4.08e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| NNMJCPGC_25 | 24245 | 24051 | CspB | 4.48e-28 | cold shock protein | 83.08 | 98.48 | CAD00094 |
| NNMJCPGC_33 | 151319 | 151125 | CspD | 4.94e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |