Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 2 | 8 | 8.77 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HBDLGIIM_42 | 145433 | 146482 | clbA | ARO:3002814 | clbA | 97.42 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HBDLGIIM_42 | 145433 | 146468 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.03 | 98.67 | KR610408 |
| HBDLGIIM_1 | 427163 | 428539 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 87.36 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HBDLGIIM_42 | 145433 | 146476 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 97.70 | 99.71 | WP_012116915.1 |
| HBDLGIIM_1 | 427169 | 428539 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.43 | 99.78 | WP_003242953.1 |
| HBDLGIIM_14 | 29834 | 32428 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.11 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| HBDLGIIM_13 | 24961 | 26142 | capB | 0.0 | Capsule | Immune modulation | 81.87 | 99.66 | NP_391471 |
| HBDLGIIM_13 | 26157 | 26606 | capC | 1.87e-115 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HBDLGIIM_6 | 27902 | 26766 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| HBDLGIIM_19 | 4229 | 5098 | pdxS | 1.34e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| HBDLGIIM_34 | 172123 | 171347 | CodY | 3.50e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| HBDLGIIM_40 | 257177 | 257569 | spxA1 | 6.23e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| HBDLGIIM_42 | 114672 | 114869 | CspA | 1.05e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| HBDLGIIM_1 | 11254 | 11448 | CspD | 2.07e-27 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| HBDLGIIM_40 | 38478 | 38284 | CspB | 5.93e-27 | cold shock protein | 84.61 | 98.48 | CAD00094 |
| HBDLGIIM_42 | 114672 | 114866 | CspR | 1.37e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| HBDLGIIM_23 | 207401 | 208273 | lipA (SAUSA300_0829) | 1.11e-162 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |