Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 2 | 5 | 6.71 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NJPNOFLO_5 | 48045 | 49091 | clbA | ARO:3002814 | clbA | 92.77 | 99.71 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NJPNOFLO_5 | 48048 | 49091 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.90 | 99.33 | KR610408 |
| NJPNOFLO_3 | 477142 | 478518 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 87.07 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NJPNOFLO_5 | 48048 | 49091 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 92.24 | 99.71 | WP_012116915.1 |
| NJPNOFLO_3 | 477148 | 478518 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.43 | 99.78 | WP_003242953.1 |
| NJPNOFLO_5 | 50842 | 51360 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 82.66 | 100.00 | WP_003242546.1 |
| NJPNOFLO_1 | 5340 | 7937 | rphC | rifamycin-inactivating phosphotransferase RphC | INTERNAL_STOP | 80.94 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| NJPNOFLO_2 | 354795 | 355976 | capB | 0.0 | Capsule | Immune modulation | 81.79 | 99.66 | NP_391471 |
| NJPNOFLO_2 | 355991 | 356440 | capC | 3.45e-114 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NJPNOFLO_9 | 31773 | 32909 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| NJPNOFLO_12 | 4361 | 5230 | pdxS | 6.40e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| NJPNOFLO_1 | 212057 | 211281 | CodY | 8.10e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| NJPNOFLO_1 | 653366 | 652974 | spxA1 | 1.28e-69 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| NJPNOFLO_5 | 65577 | 65380 | CspA | 3.13e-32 | cold shock protein | 92.42 | 100.00 | CAA62903 |
| NJPNOFLO_5 | 65577 | 65383 | CspR | 1.55e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |