Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 1 | 7 | 7.35 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PNAJJJOO_4 | 341919 | 342968 | clbA | ARO:3002814 | clbA | 97.42 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PNAJJJOO_4 | 341919 | 342954 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 87.74 | 98.67 | KR610408 |
| PNAJJJOO_3 | 386857 | 388233 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 86.86 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PNAJJJOO_4 | 341919 | 342962 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 97.70 | 99.71 | WP_012116915.1 |
| PNAJJJOO_3 | 386857 | 388227 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.21 | 99.78 | WP_003242953.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| PNAJJJOO_2 | 481238 | 482419 | capB | 0.0 | Capsule | Immune modulation | 82.46 | 99.66 | NP_391471 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PNAJJJOO_8 | 28157 | 27021 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| PNAJJJOO_11 | 12500 | 11631 | pdxS | 8.82e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| PNAJJJOO_1 | 917324 | 916548 | CodY | 1.61e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| PNAJJJOO_5 | 253394 | 253786 | spxA1 | 6.29e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| PNAJJJOO_4 | 324430 | 324627 | CspA | 2.27e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| PNAJJJOO_5 | 38410 | 38216 | CspB | 5.99e-27 | cold shock protein | 84.61 | 98.48 | CAD00094 |
| PNAJJJOO_4 | 324430 | 324624 | CspR | 2.98e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| PNAJJJOO_2 | 842848 | 843720 | lipA (SAUSA300_0829) | 3.16e-162 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |