Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 1 | 3 | 6.78 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HHOLCGFJ_12 | 651421 | 652068 | Alkalihalobacillus clausii chloramphenicol acetyltransferase | ARO:3004452 | Acla_ACT_CHL | 88.21 | 94.30 | AY238971.1 |
| HHOLCGFJ_23 | 418488 | 419412 | BCL-1 | ARO:3004749 | BCL-1 | 100.00 | 98.05 | EF540343.1 |
| HHOLCGFJ_23 | 415323 | 416093 | ANT(4')-Ib | ARO:3003905 | ANT(4')-Ib | 99.22 | 100.00 | EF540343.1 |
| HHOLCGFJ_44 | 277590 | 278435 | Erm(34) | ARO:3000600 | Erm(34) | 96.80 | 100.00 | AY234334.1 |
| HHOLCGFJ_45 | 205690 | 206742 | clbC | ARO:3002816 | clbC | 100.00 | 100.00 | AP006627.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HHOLCGFJ_23 | 415323 | 416093 | ant(4')-Ib | Amikacin, Tobramycin, Isepamicin, Dibekacin | 99.09 | 100.00 | AJ506108 |
| HHOLCGFJ_12 | 651390 | 652066 | cat | Chloramphenicol | 97.08 | 98.40 | AY238971 |
| HHOLCGFJ_44 | 277597 | 278435 | erm(34) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 95.47 | 99.17 | AY234334 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HHOLCGFJ_23 | 418506 | 419408 | blaBCL-1 | class A beta-lactamase BCL-1 | ALLELEX | 100.00 | 100.00 | WP_065825670.1 |
| HHOLCGFJ_45 | 205690 | 206739 | clbB | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbB | EXACTX | 100.00 | 100.00 | WP_011245929.1 |
| HHOLCGFJ_12 | 651424 | 652068 | catA | type A-10 chloramphenicol O-acetyltransferase | BLASTX | 99.53 | 100.00 | WP_035203840.1 |
| HHOLCGFJ_23 | 415323 | 416090 | aadD2 | aminoglycoside O-nucleotidyltransferase ANT(4')-Ib | BLASTX | 99.22 | 100.00 | WP_035202393.1 |
| HHOLCGFJ_44 | 277596 | 278435 | erm(34) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(34) | BLASTX | 97.14 | 99.64 | WP_063844504.1 |
| HHOLCGFJ_34 | 56165 | 58756 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.14 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| HHOLCGFJ_1 | 571689 | 572339 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.85 | 100.00 | WP_011247375 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HHOLCGFJ_4 | 32637 | 33773 | tufA | 0.0 | elongation factor Tu | 87.33 | 95.69 | AHM69299 |
| HHOLCGFJ_3 | 36421 | 36663 | SpoVG | 2.57e-37 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| HHOLCGFJ_46 | 29919 | 29725 | CspA | 1.20e-29 | cold shock protein | 86.15 | 98.48 | CAA62903 |