Genome ID：GCA_030662185.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
13	10	7	17.83

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
PNLIMCFI_1	779400	779738	ykkC	ARO:3003063	ykkC	100.00	100.00	AL009126.1
PNLIMCFI_1	779083	779400	ykkD	ARO:3003064	ykkD	99.05	100.00	AL009126.1
PNLIMCFI_22	615707	616561	aadK	ARO:3002627	aadK	97.89	100.00	AL009126.1
PNLIMCFI_22	586124	587326	blt	ARO:3003006	blt	99.75	100.00	L32599.1
PNLIMCFI_22	356654	357823	bmr	ARO:3003007	bmr	99.49	100.00	M33768.1
PNLIMCFI_23	297009	299579	Bacillus subtilis mprF	ARO:3003324	Bsub_mprF	99.88	100.00	AL009126.3
PNLIMCFI_24	191509	193137	vmlR	ARO:3004476	vmlR	98.52	99.09	NC_000964.3
PNLIMCFI_25	109988	110908	mphK	ARO:3004541	mphK	98.68	100.00	CP010314.1
PNLIMCFI_25	96652	98091	lmrB	ARO:3002813	lmrB	99.79	100.42	JYFL01000006.1
PNLIMCFI_25	46949	47542	tmrB	ARO:3003059	tmrB	97.46	100.00	AL009126.3

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
PNLIMCFI_25	109988	110908	mph(K)	Spiramycin, Telithromycin	99.02	100.00	NC_000964
PNLIMCFI_22	615707	616561	aadK	Streptomycin	98.60	100.00	M26879
PNLIMCFI_12	1022760	1024136	tet(L)	Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline	98.47	100.00	D12567

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
PNLIMCFI_12	1022763	1024136	tet(L)	tetracycline efflux MFS transporter Tet(L)	BLASTX	98.69	100.00	WP_063856081.1
PNLIMCFI_25	110000	110908	mphK	macrolide 2'-phosphotransferase MphK	BLASTX	98.68	99.02	WP_003246254.1
PNLIMCFI_24	191512	193137	vmlR	ABC-F type ribosomal protection protein VmlR	BLASTX	98.52	98.90	WP_003234144.1
PNLIMCFI_22	615710	616561	aadK	aminoglycoside 6-adenylyltransferase AadK	BLASTX	97.89	100.00	WP_003229862.1
PNLIMCFI_12	1020210	1020728	satA	streptothricin N-acetyltransferase SatA	BLASTX	90.75	100.00	WP_003242546.1
PNLIMCFI_22	57718	60315	rphC	rifamycin-inactivating phosphotransferase RphC	BLASTX	80.71	100.00	WP_087347987.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
PNLIMCFI_12	109350	110288	dhbB	0.0	Bacillibactin	Nutritional/Metabolic factor	99.89	100.00	NP_391077
PNLIMCFI_12	525044	526225	capB	0.0	Capsule	Immune modulation	99.75	100.00	NP_391471
PNLIMCFI_12	110316	111935	dhbE	0.0	Bacillibactin	Nutritional/Metabolic factor	99.69	100.00	NP_391078
PNLIMCFI_22	156466	157107	hlyIII	0.0	Hemolysin III	Exotoxin	99.53	100.00	NP_390062
PNLIMCFI_12	102194	109330	dhbF	0.0	Bacillibactin	Nutritional/Metabolic factor	99.41	100.00	NP_391076
PNLIMCFI_12	111964	113160	dhbC	0.0	Bacillibactin	Nutritional/Metabolic factor	99.33	100.00	NP_391079
PNLIMCFI_12	523419	524561	capA	0.0	Capsule	Immune modulation	99.30	100.00	NP_391469
PNLIMCFI_12	524580	525029	capC	0.0	Capsule	Immune modulation	99.11	100.00	NP_391470
PNLIMCFI_12	113186	113971	dhbA	0.0	Bacillibactin	Nutritional/Metabolic factor	98.86	100.00	NP_391080
PNLIMCFI_22	8419	10182	dep/capD	0.0	Capsule	Immune modulation	98.75	100.00	NP_389723

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
PNLIMCFI_26	31635	32771	tufA	0.0	elongation factor Tu	85.75	95.69	AHM69299
PNLIMCFI_28	4231	5100	pdxS	1.10e-151	encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS	83.79	98.31	ACE61268
PNLIMCFI_1	466015	465239	CodY	9.80e-125	nutrient-responsive regulator	81.08	100.00	ACJ80679
PNLIMCFI_12	368257	368826	ClpP	6.38e-99	part of proteolytic complex	81.05	97.44	BAB94595
PNLIMCFI_1	934279	933887	spxA1	7.70e-70	redox-responsive transcription factor	83.97	100.00	AAF21893
PNLIMCFI_1	934279	933887	spx	4.60e-68	essential gene which is a thiol/oxidative stress sensor	80.15	100.00	BAB57159
PNLIMCFI_27	20482	20724	SpoVG	7.48e-39	RNA-binding protein	81.48	79.41	AAT02994
PNLIMCFI_24	138425	138622	CspA	9.59e-32	cold shock protein	90.91	100.00	CAA62903