Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 2 | 6 | 7.48 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CNHDDKAJ_11 | 36533 | 37579 | clbA | ARO:3002814 | clbA | 92.77 | 99.71 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CNHDDKAJ_11 | 36533 | 37576 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.90 | 99.33 | KR610408 |
| CNHDDKAJ_288 | 477233 | 478609 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 87.07 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CNHDDKAJ_11 | 36533 | 37576 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 92.24 | 99.71 | WP_012116915.1 |
| CNHDDKAJ_288 | 477239 | 478609 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.43 | 99.78 | WP_003242953.1 |
| CNHDDKAJ_11 | 34264 | 34782 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 82.66 | 100.00 | WP_003242546.1 |
| CNHDDKAJ_279 | 469150 | 471747 | rphC | rifamycin-inactivating phosphotransferase RphC | INTERNAL_STOP | 80.94 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| CNHDDKAJ_268 | 377212 | 378393 | capB | 0.0 | Capsule | Immune modulation | 81.79 | 99.66 | NP_391471 |
| CNHDDKAJ_268 | 378408 | 378857 | capC | 3.53e-114 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CNHDDKAJ_321 | 27634 | 26498 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| CNHDDKAJ_107 | 12476 | 11607 | pdxS | 6.35e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| CNHDDKAJ_279 | 265030 | 265806 | CodY | 1.37e-124 | nutrient-responsive regulator | 80.69 | 100.00 | ACJ80679 |
| CNHDDKAJ_108 | 327195 | 327587 | spxA1 | 5.65e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| CNHDDKAJ_11 | 20047 | 20244 | CspA | 1.31e-32 | cold shock protein | 92.42 | 100.00 | CAA62903 |
| CNHDDKAJ_11 | 20047 | 20241 | CspR | 6.49e-27 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| CNHDDKAJ_108 | 106731 | 106537 | CspB | 8.90e-27 | cold shock protein | 84.61 | 98.48 | CAD00094 |