Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NLIIHIGN_92 | 8730 | 9287 | lnuA | ARO:3002835 | lnuA | 97.52 | 114.91 | M14039.1 |
| NLIIHIGN_92 | 6590 | 8509 | tet(W) | ARO:3000194 | tet(W) | 97.18 | 100.00 | AJ222769.3 |
| NLIIHIGN_109 | 1128 | 2585 | AAC(6')-Ie-APH(2'')-Ia bifunctional protein | ARO:3002597 | AAC6_Ie_APH2_Ia | 99.79 | 101.25 | GU565967.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NLIIHIGN_122 | 2811 | 3677 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF864551 |
| NLIIHIGN_109 | 1170 | 2585 | aac(6')-aph(2'') | Gentamicin, Tobramycin, Netilmicin, Kanamycin, Amikacin, Dibekacin, Isepamicin, Fortimicin, Streptomycin | 99.93 | 98.33 | M13771 |
| NLIIHIGN_109 | 1170 | 2585 | aph(2'')-Ia | Amikacin, Gentamicin, Tobramycin, Kanamycin | 99.93 | 95.93 | AP009486 |
| NLIIHIGN_92 | 6590 | 8509 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.11 | 100.00 | FN396364 |
| NLIIHIGN_92 | 8802 | 9287 | lnu(A) | Lincomycin | 98.77 | 100.00 | M14039 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NLIIHIGN_122 | 2811 | 3674 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| NLIIHIGN_92 | 8802 | 9284 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
| NLIIHIGN_92 | 6590 | 8506 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | EXACTX | 100.00 | 100.00 | WP_000691721.1 |
| NLIIHIGN_109 | 1149 | 2585 | aac(6')-Ie/aph(2'')-Ia | bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia | BLASTX | 98.54 | 97.56 | WP_012655884.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NLIIHIGN_33 | 17324 | 17130 | CspA | 5.12e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |