Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 2 | 7 | 7.87 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MMJNICGO_5 | 343739 | 344788 | clbA | ARO:3002814 | clbA | 99.71 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MMJNICGO_5 | 343739 | 344774 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.71 | 98.67 | KR610408 |
| MMJNICGO_2 | 367078 | 368454 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 86.93 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MMJNICGO_5 | 343739 | 344785 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 99.71 | 100.00 | WP_012116915.1 |
| MMJNICGO_2 | 367078 | 368448 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.21 | 99.78 | WP_003242953.1 |
| MMJNICGO_2 | 366347 | 366865 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 80.35 | 100.00 | WP_003242546.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| MMJNICGO_3 | 480606 | 481787 | capB | 0.0 | Capsule | Immune modulation | 82.21 | 99.66 | NP_391471 |
| MMJNICGO_3 | 481802 | 482251 | capC | 2.18e-109 | Capsule | Immune modulation | 82.93 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MMJNICGO_8 | 31770 | 32906 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| MMJNICGO_11 | 12505 | 11636 | pdxS | 1.36e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| MMJNICGO_1 | 756976 | 757752 | CodY | 1.30e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| MMJNICGO_1 | 253333 | 253725 | spxA1 | 2.38e-69 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| MMJNICGO_5 | 329180 | 329377 | CspA | 6.69e-31 | cold shock protein | 89.39 | 100.00 | CAA62903 |
| MMJNICGO_6 | 191611 | 191417 | CspD | 2.10e-28 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| MMJNICGO_4 | 289336 | 290208 | lipA (SAUSA300_0829) | 1.38e-162 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |