Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 1 | 4 | 5.74 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NPMKDELJ_6 | 269586 | 270356 | ANT(4')-Ib | ARO:3003905 | ANT(4')-Ib | 94.14 | 100.00 | EF540343.1 |
| NPMKDELJ_16 | 124915 | 125760 | Erm(34) | ARO:3000600 | Erm(34) | 100.00 | 100.00 | AY234334.1 |
| NPMKDELJ_33 | 48164 | 49216 | clbC | ARO:3002816 | clbC | 97.14 | 100.00 | AP006627.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NPMKDELJ_16 | 124915 | 125760 | erm(34) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | AY234334 |
| NPMKDELJ_6 | 269586 | 270356 | ant(4')-Ib | Amikacin, Tobramycin, Isepamicin, Dibekacin | 94.16 | 100.00 | AJ506108 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NPMKDELJ_16 | 124915 | 125757 | erm(34) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(34) | EXACTX | 100.00 | 100.00 | WP_063844504.1 |
| NPMKDELJ_33 | 48164 | 49213 | clbB | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbB | BLASTX | 97.14 | 100.00 | WP_011245929.1 |
| NPMKDELJ_6 | 272770 | 273672 | blaBCL | BCL family class A beta-lactamase | BLASTX | 96.68 | 100.00 | WP_065825670.1 |
| NPMKDELJ_6 | 269586 | 270353 | aadD2 | aminoglycoside O-nucleotidyltransferase ANT(4')-Ib | BLASTX | 94.14 | 100.00 | WP_035202393.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| NPMKDELJ_13 | 57958 | 58608 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 97.23 | 100.00 | WP_011247375 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NPMKDELJ_20 | 33248 | 34390 | tufA | 0.0 | elongation factor Tu | 87.14 | 96.19 | AHM69299 |
| NPMKDELJ_8 | 42600 | 42358 | SpoVG | 2.57e-37 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| NPMKDELJ_52 | 1722 | 1919 | CspA | 4.33e-31 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| NPMKDELJ_17 | 85990 | 86178 | CspB | 1.27e-25 | cold shock protein | 82.54 | 95.45 | CAD00094 |