Genome ID:GCA_035804415.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 11 | 10 | 9 | 17.38 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DODHPINN_23 | 64881 | 65732 | aadK | ARO:3002627 | aadK | 97.89 | 99.65 | AL009126.1 |
| DODHPINN_53 | 62272 | 62589 | ykkD | ARO:3003064 | ykkD | 98.10 | 100.00 | AL009126.1 |
| DODHPINN_53 | 61934 | 62272 | ykkC | ARO:3003063 | ykkC | 98.21 | 100.00 | AL009126.1 |
| DODHPINN_6 | 45656 | 47095 | lmrB | ARO:3002813 | lmrB | 98.74 | 100.42 | JYFL01000006.1 |
| DODHPINN_46 | 27255 | 29825 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.65 | 100.00 | AL009126.3 |
| DODHPINN_39 | 18885 | 19478 | tmrB | ARO:3003059 | tmrB | 97.97 | 100.00 | AL009126.3 |
| DODHPINN_103 | 6844 | 8046 | blt | ARO:3003006 | blt | 99.25 | 100.00 | L32599.1 |
| DODHPINN_57 | 5889 | 7535 | vmlR | ARO:3004476 | vmlR | 98.18 | 100.18 | NC_000964.3 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DODHPINN_23 | 64881 | 65732 | aadK | Streptomycin | 98.36 | 99.65 | M26879 |
| DODHPINN_6 | 32844 | 33763 | mph(K) | Spiramycin, Telithromycin | 97.72 | 99.89 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DODHPINN_57 | 5889 | 7532 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.18 | 100.00 | WP_003234144.1 |
| DODHPINN_23 | 64881 | 65729 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 97.89 | 100.00 | WP_003229862.1 |
| DODHPINN_4 | 58153 | 58671 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 93.06 | 100.00 | WP_003242546.1 |
| DODHPINN_75 | 39076 | 41673 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.48 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| DODHPINN_44 | 23842 | 25023 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| DODHPINN_48 | 143839 | 144624 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.36 | 100.00 | NP_391080 |
| DODHPINN_44 | 22217 | 23359 | capA | 0.0 | Capsule | Immune modulation | 99.30 | 100.00 | NP_391469 |
| DODHPINN_30 | 12292 | 14055 | dep/capD | 0.0 | Capsule | Immune modulation | 99.09 | 100.00 | NP_389723 |
| DODHPINN_48 | 140014 | 140952 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.94 | 100.00 | NP_391077 |
| DODHPINN_44 | 23378 | 23827 | capC | 0.0 | Capsule | Immune modulation | 98.89 | 100.00 | NP_391470 |
| DODHPINN_48 | 142617 | 143813 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.58 | 100.00 | NP_391079 |
| DODHPINN_48 | 132858 | 139994 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.56 | 100.00 | NP_391076 |
| DODHPINN_47 | 29032 | 29673 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 97.66 | 100.00 | NP_390062 |
| DODHPINN_48 | 140980 | 142599 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.28 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DODHPINN_49 | 31658 | 32794 | tufA | 0.0 | elongation factor Tu | 85.75 | 95.69 | AHM69299 |
| DODHPINN_89 | 11496 | 10627 | pdxS | 6.93e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.45 | 98.31 | ACE61268 |
| DODHPINN_12 | 112596 | 111820 | CodY | 1.86e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| DODHPINN_32 | 79473 | 78904 | ClpP | 6.83e-100 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| DODHPINN_26 | 83780 | 84172 | spxA1 | 6.08e-71 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| DODHPINN_26 | 83780 | 84172 | spx | 3.62e-69 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| DODHPINN_76 | 11068 | 11310 | SpoVG | 6.22e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| DODHPINN_57 | 51322 | 51125 | CspA | 2.45e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| DODHPINN_47 | 40902 | 41096 | CspD | 7.80e-29 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| DODHPINN_11 | 17228 | 17422 | CspB | 4.41e-28 | cold shock protein | 83.08 | 98.48 | CAD00094 |