Genome ID:GCA_035804615.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 10 | 9 | 14.35 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JNFPGMDP_30 | 50358 | 50951 | tmrB | ARO:3003059 | tmrB | 97.97 | 100.00 | AL009126.3 |
| JNFPGMDP_15 | 39236 | 40861 | vmlR | ARO:3004476 | vmlR | 96.49 | 98.90 | NC_000964.3 |
| JNFPGMDP_93 | 38750 | 39067 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| JNFPGMDP_93 | 38412 | 38750 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| JNFPGMDP_32 | 140 | 2710 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.77 | 100.00 | AL009126.3 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JNFPGMDP_15 | 39239 | 40861 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 96.49 | 98.90 | WP_003234144.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| JNFPGMDP_8 | 68884 | 69669 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.62 | 100.00 | NP_391080 |
| JNFPGMDP_8 | 72556 | 73494 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.57 | 100.00 | NP_391077 |
| JNFPGMDP_26 | 32694 | 33335 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.53 | 100.00 | NP_390062 |
| JNFPGMDP_86 | 8169 | 9345 | capB | 0.0 | Capsule | Immune modulation | 99.24 | 99.92 | NP_391471 |
| JNFPGMDP_58 | 20682 | 22445 | dep/capD | 0.0 | Capsule | Immune modulation | 99.15 | 100.00 | NP_389723 |
| JNFPGMDP_86 | 9828 | 10970 | capA | 0.0 | Capsule | Immune modulation | 98.86 | 100.00 | NP_391469 |
| JNFPGMDP_8 | 73514 | 80650 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.85 | 100.00 | NP_391076 |
| JNFPGMDP_8 | 70909 | 72528 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.77 | 100.00 | NP_391078 |
| JNFPGMDP_86 | 9360 | 9809 | capC | 0.0 | Capsule | Immune modulation | 98.67 | 100.00 | NP_391470 |
| JNFPGMDP_8 | 69695 | 70891 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.66 | 100.00 | NP_391079 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JNFPGMDP_11 | 31691 | 32827 | tufA | 0.0 | elongation factor Tu | 84.70 | 95.69 | AHM69299 |
| JNFPGMDP_55 | 11389 | 10520 | pdxS | 1.12e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| JNFPGMDP_19 | 132889 | 133665 | CodY | 2.18e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| JNFPGMDP_7 | 74261 | 74830 | ClpP | 9.58e-100 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| JNFPGMDP_49 | 28933 | 28541 | spxA1 | 3.33e-71 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| JNFPGMDP_49 | 28933 | 28541 | spx | 1.99e-69 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| JNFPGMDP_20 | 34593 | 34351 | SpoVG | 1.02e-38 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| JNFPGMDP_15 | 5112 | 5309 | CspA | 2.57e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| JNFPGMDP_26 | 44567 | 44761 | CspD | 2.80e-29 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| JNFPGMDP_13 | 200810 | 201004 | CspB | 2.12e-27 | cold shock protein | 83.08 | 98.48 | CAD00094 |