Genome ID:GCA_035804835.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 11 | 10 | 9 | 17.38 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GAMLCGEA_39 | 50078 | 51517 | lmrB | ARO:3002813 | lmrB | 98.74 | 100.42 | JYFL01000006.1 |
| GAMLCGEA_13 | 41905 | 42243 | ykkC | ARO:3003063 | ykkC | 98.21 | 100.00 | AL009126.1 |
| GAMLCGEA_13 | 41588 | 41905 | ykkD | ARO:3003064 | ykkD | 98.10 | 100.00 | AL009126.1 |
| GAMLCGEA_39 | 37274 | 38194 | mphK | ARO:3004541 | mphK | 98.68 | 100.00 | CP010314.1 |
| GAMLCGEA_79 | 35004 | 36650 | vmlR | ARO:3004476 | vmlR | 98.36 | 100.18 | NC_000964.3 |
| GAMLCGEA_40 | 15302 | 16156 | aadK | ARO:3002627 | aadK | 98.24 | 100.00 | AL009126.1 |
| GAMLCGEA_94 | 7045 | 8247 | blt | ARO:3003006 | blt | 99.25 | 100.00 | L32599.1 |
| GAMLCGEA_72 | 1011 | 1604 | tmrB | ARO:3003059 | tmrB | 98.48 | 100.00 | AL009126.3 |
| GAMLCGEA_7 | 205 | 2775 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.77 | 100.00 | AL009126.3 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GAMLCGEA_40 | 15302 | 16156 | aadK | Streptomycin | 98.71 | 100.00 | M26879 |
| GAMLCGEA_39 | 37274 | 38194 | mph(K) | Spiramycin, Telithromycin | 98.05 | 100.00 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GAMLCGEA_39 | 37274 | 38182 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 98.68 | 99.02 | WP_003246254.1 |
| GAMLCGEA_79 | 35007 | 36650 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.36 | 100.00 | WP_003234144.1 |
| GAMLCGEA_40 | 15305 | 16156 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.24 | 100.00 | WP_003229862.1 |
| GAMLCGEA_63 | 51093 | 51611 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.75 | 100.00 | WP_003242546.1 |
| GAMLCGEA_15 | 73151 | 75748 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.48 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| GAMLCGEA_6 | 35057 | 36238 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| GAMLCGEA_21 | 2654 | 3439 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.36 | 100.00 | NP_391080 |
| GAMLCGEA_6 | 33432 | 34574 | capA | 0.0 | Capsule | Immune modulation | 99.30 | 100.00 | NP_391469 |
| GAMLCGEA_15 | 20210 | 21973 | dep/capD | 0.0 | Capsule | Immune modulation | 98.98 | 100.00 | NP_389723 |
| GAMLCGEA_21 | 6326 | 7264 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.94 | 100.00 | NP_391077 |
| GAMLCGEA_35 | 91481 | 92122 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 98.91 | 100.00 | NP_390062 |
| GAMLCGEA_6 | 34593 | 35042 | capC | 0.0 | Capsule | Immune modulation | 98.89 | 100.00 | NP_391470 |
| GAMLCGEA_21 | 3465 | 4661 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.75 | 100.00 | NP_391079 |
| GAMLCGEA_21 | 7284 | 14420 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.57 | 100.00 | NP_391076 |
| GAMLCGEA_21 | 4679 | 6298 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.28 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GAMLCGEA_47 | 27991 | 26855 | tufA | 0.0 | elongation factor Tu | 85.75 | 95.69 | AHM69299 |
| GAMLCGEA_69 | 11645 | 10776 | pdxS | 1.14e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| GAMLCGEA_8 | 150249 | 151025 | CodY | 2.29e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| GAMLCGEA_18 | 121533 | 122102 | ClpP | 9.44e-100 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| GAMLCGEA_20 | 28885 | 28493 | spxA1 | 3.33e-71 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| GAMLCGEA_20 | 28885 | 28493 | spx | 1.99e-69 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| GAMLCGEA_73 | 11291 | 11533 | SpoVG | 6.26e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| GAMLCGEA_98 | 2091 | 1894 | CspA | 3.12e-33 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| GAMLCGEA_35 | 103351 | 103545 | CspD | 1.16e-28 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| GAMLCGEA_64 | 11947 | 12141 | CspB | 3.40e-28 | cold shock protein | 83.08 | 98.48 | CAD00094 |