Genome ID:GCA_035804995.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 11 | 10 | 9 | 17.38 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JPODMPOM_37 | 62275 | 62592 | ykkD | ARO:3003064 | ykkD | 98.10 | 100.00 | AL009126.1 |
| JPODMPOM_37 | 61937 | 62275 | ykkC | ARO:3003063 | ykkC | 98.21 | 100.00 | AL009126.1 |
| JPODMPOM_57 | 28953 | 30599 | vmlR | ARO:3004476 | vmlR | 98.18 | 100.18 | NC_000964.3 |
| JPODMPOM_34 | 20920 | 22359 | lmrB | ARO:3002813 | lmrB | 99.58 | 100.42 | JYFL01000006.1 |
| JPODMPOM_42 | 18883 | 19476 | tmrB | ARO:3003059 | tmrB | 97.97 | 100.00 | AL009126.3 |
| JPODMPOM_21 | 15260 | 16111 | aadK | ARO:3002627 | aadK | 98.24 | 99.65 | AL009126.1 |
| JPODMPOM_40 | 9347 | 11917 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.77 | 100.00 | AL009126.3 |
| JPODMPOM_89 | 653 | 1855 | blt | ARO:3003006 | blt | 99.25 | 100.00 | L32599.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JPODMPOM_21 | 15260 | 16111 | aadK | Streptomycin | 98.48 | 99.65 | M26879 |
| JPODMPOM_34 | 34252 | 35171 | mph(K) | Spiramycin, Telithromycin | 97.72 | 99.89 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JPODMPOM_21 | 15263 | 16111 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.24 | 100.00 | WP_003229862.1 |
| JPODMPOM_57 | 28953 | 30596 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.18 | 100.00 | WP_003234144.1 |
| JPODMPOM_26 | 58280 | 58798 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 93.06 | 100.00 | WP_003242546.1 |
| JPODMPOM_27 | 2778 | 5375 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.48 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| JPODMPOM_18 | 111935 | 113116 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| JPODMPOM_45 | 62381 | 63166 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.36 | 100.00 | NP_391080 |
| JPODMPOM_18 | 113599 | 114741 | capA | 0.0 | Capsule | Immune modulation | 99.30 | 100.00 | NP_391469 |
| JPODMPOM_27 | 56553 | 58316 | dep/capD | 0.0 | Capsule | Immune modulation | 99.09 | 100.00 | NP_389723 |
| JPODMPOM_45 | 66053 | 66991 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.94 | 100.00 | NP_391077 |
| JPODMPOM_18 | 113131 | 113580 | capC | 0.0 | Capsule | Immune modulation | 98.89 | 100.00 | NP_391470 |
| JPODMPOM_45 | 63192 | 64388 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.58 | 100.00 | NP_391079 |
| JPODMPOM_45 | 67011 | 74147 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.57 | 100.00 | NP_391076 |
| JPODMPOM_24 | 29032 | 29673 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 97.66 | 100.00 | NP_390062 |
| JPODMPOM_45 | 64406 | 66025 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.28 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JPODMPOM_41 | 31731 | 32867 | tufA | 0.0 | elongation factor Tu | 85.75 | 95.69 | AHM69299 |
| JPODMPOM_60 | 4452 | 5321 | pdxS | 1.14e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| JPODMPOM_51 | 116460 | 117236 | CodY | 1.85e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| JPODMPOM_22 | 121799 | 122368 | ClpP | 9.37e-100 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| JPODMPOM_54 | 28736 | 28344 | spxA1 | 3.31e-71 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| JPODMPOM_54 | 28736 | 28344 | spx | 1.97e-69 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| JPODMPOM_11 | 11066 | 11308 | SpoVG | 6.21e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| JPODMPOM_57 | 74387 | 74190 | CspA | 3.44e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| JPODMPOM_24 | 40903 | 41097 | CspD | 7.79e-29 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| JPODMPOM_23 | 94594 | 94788 | CspB | 1.15e-27 | cold shock protein | 83.08 | 98.48 | CAD00094 |