Genome ID:GCA_035805055.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 11 | 10 | 9 | 17.38 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CJMLLOPC_57 | 104901 | 106340 | lmrB | ARO:3002813 | lmrB | 99.58 | 100.42 | JYFL01000006.1 |
| CJMLLOPC_42 | 29004 | 30650 | vmlR | ARO:3004476 | vmlR | 98.18 | 100.18 | NC_000964.3 |
| CJMLLOPC_7 | 15261 | 16112 | aadK | ARO:3002627 | aadK | 98.24 | 99.65 | AL009126.1 |
| CJMLLOPC_22 | 9348 | 11918 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.77 | 100.00 | AL009126.3 |
| CJMLLOPC_19 | 6477 | 6815 | ykkC | ARO:3003063 | ykkC | 98.21 | 100.00 | AL009126.1 |
| CJMLLOPC_19 | 6160 | 6477 | ykkD | ARO:3003064 | ykkD | 98.10 | 100.00 | AL009126.1 |
| CJMLLOPC_76 | 1106 | 1699 | tmrB | ARO:3003059 | tmrB | 97.97 | 100.00 | AL009126.3 |
| CJMLLOPC_73 | 733 | 1935 | blt | ARO:3003006 | blt | 99.25 | 100.00 | L32599.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CJMLLOPC_7 | 15261 | 16112 | aadK | Streptomycin | 98.48 | 99.65 | M26879 |
| CJMLLOPC_57 | 92089 | 93008 | mph(K) | Spiramycin, Telithromycin | 97.72 | 99.89 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CJMLLOPC_7 | 15264 | 16112 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.24 | 100.00 | WP_003229862.1 |
| CJMLLOPC_42 | 29004 | 30647 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.18 | 100.00 | WP_003234144.1 |
| CJMLLOPC_25 | 37293 | 37811 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 93.06 | 100.00 | WP_003242546.1 |
| CJMLLOPC_24 | 135464 | 138061 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.48 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| CJMLLOPC_30 | 112271 | 113452 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| CJMLLOPC_14 | 36236 | 37021 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.36 | 100.00 | NP_391080 |
| CJMLLOPC_30 | 113935 | 115077 | capA | 0.0 | Capsule | Immune modulation | 99.30 | 100.00 | NP_391469 |
| CJMLLOPC_24 | 82523 | 84286 | dep/capD | 0.0 | Capsule | Immune modulation | 99.09 | 100.00 | NP_389723 |
| CJMLLOPC_14 | 32411 | 33349 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.94 | 100.00 | NP_391077 |
| CJMLLOPC_30 | 113467 | 113916 | capC | 0.0 | Capsule | Immune modulation | 98.89 | 100.00 | NP_391470 |
| CJMLLOPC_14 | 25255 | 32391 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.57 | 100.00 | NP_391076 |
| CJMLLOPC_14 | 35014 | 36210 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.50 | 100.00 | NP_391079 |
| CJMLLOPC_27 | 29033 | 29674 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 97.66 | 100.00 | NP_390062 |
| CJMLLOPC_14 | 33377 | 34996 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.28 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CJMLLOPC_38 | 31862 | 32998 | tufA | 0.0 | elongation factor Tu | 85.75 | 95.69 | AHM69299 |
| CJMLLOPC_29 | 4382 | 5251 | pdxS | 1.14e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| CJMLLOPC_6 | 116349 | 117125 | CodY | 1.85e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| CJMLLOPC_8 | 124819 | 125388 | ClpP | 9.56e-100 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| CJMLLOPC_45 | 28853 | 28461 | spxA1 | 3.32e-71 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| CJMLLOPC_45 | 28853 | 28461 | spx | 1.98e-69 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| CJMLLOPC_34 | 34770 | 34528 | SpoVG | 6.22e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| CJMLLOPC_42 | 74438 | 74241 | CspA | 3.44e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| CJMLLOPC_27 | 40904 | 41098 | CspD | 7.79e-29 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| CJMLLOPC_58 | 31552 | 31358 | CspB | 7.42e-28 | cold shock protein | 83.08 | 98.48 | CAD00094 |