Genome ID:GCA_035805115.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 12 | 10 | 9 | 18.03 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IFMEFEAN_56 | 109517 | 110950 | lmrB | ARO:3002813 | lmrB | 99.16 | 100.00 | JYFL01000006.1 |
| IFMEFEAN_21 | 58875 | 59213 | ykkC | ARO:3003063 | ykkC | 98.21 | 100.00 | AL009126.1 |
| IFMEFEAN_21 | 58558 | 58875 | ykkD | ARO:3003064 | ykkD | 98.10 | 100.00 | AL009126.1 |
| IFMEFEAN_56 | 46431 | 47024 | tmrB | ARO:3003059 | tmrB | 100.00 | 100.00 | AL009126.3 |
| IFMEFEAN_103 | 22555 | 23475 | mphK | ARO:3004541 | mphK | 98.68 | 100.00 | CP010314.1 |
| IFMEFEAN_65 | 18786 | 19955 | bmr | ARO:3003007 | bmr | 99.49 | 100.00 | M33768.1 |
| IFMEFEAN_6 | 8777 | 11347 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.77 | 100.00 | AL009126.3 |
| IFMEFEAN_36 | 7706 | 8557 | aadK | ARO:3002627 | aadK | 98.24 | 99.65 | AL009126.1 |
| IFMEFEAN_26 | 5905 | 7548 | vmlR | ARO:3004476 | vmlR | 98.32 | 100.00 | NC_000964.3 |
| IFMEFEAN_81 | 654 | 1856 | blt | ARO:3003006 | blt | 99.25 | 100.00 | L32599.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IFMEFEAN_36 | 7706 | 8557 | aadK | Streptomycin | 98.48 | 99.65 | M26879 |
| IFMEFEAN_103 | 22555 | 23475 | mph(K) | Spiramycin, Telithromycin | 98.05 | 100.00 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IFMEFEAN_103 | 22555 | 23463 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 98.68 | 99.02 | WP_003246254.1 |
| IFMEFEAN_36 | 7709 | 8557 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.24 | 100.00 | WP_003229862.1 |
| IFMEFEAN_26 | 5908 | 7548 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 96.71 | 99.82 | WP_003234144.1 |
| IFMEFEAN_54 | 17246 | 17638 | satA | streptothricin N-acetyltransferase SatA | PARTIALX | 91.60 | 75.72 | WP_003242546.1 |
| IFMEFEAN_16 | 70921 | 73518 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.48 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| IFMEFEAN_124 | 1857 | 3038 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| IFMEFEAN_76 | 63427 | 64212 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.36 | 100.00 | NP_391080 |
| IFMEFEAN_124 | 232 | 1374 | capA | 0.0 | Capsule | Immune modulation | 99.30 | 100.00 | NP_391469 |
| IFMEFEAN_16 | 18071 | 19834 | dep/capD | 0.0 | Capsule | Immune modulation | 98.98 | 100.00 | NP_389723 |
| IFMEFEAN_76 | 59602 | 60540 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.94 | 100.00 | NP_391077 |
| IFMEFEAN_55 | 1201 | 1842 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 98.91 | 100.00 | NP_390062 |
| IFMEFEAN_124 | 1393 | 1842 | capC | 0.0 | Capsule | Immune modulation | 98.89 | 100.00 | NP_391470 |
| IFMEFEAN_76 | 62205 | 63401 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.75 | 100.00 | NP_391079 |
| IFMEFEAN_76 | 52446 | 59582 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.56 | 100.00 | NP_391076 |
| IFMEFEAN_76 | 60568 | 62187 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.28 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IFMEFEAN_45 | 28055 | 26919 | tufA | 0.0 | elongation factor Tu | 85.75 | 95.69 | AHM69299 |
| IFMEFEAN_32 | 4533 | 5402 | pdxS | 1.12e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| IFMEFEAN_4 | 73982 | 74758 | CodY | 1.27e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| IFMEFEAN_18 | 93967 | 94536 | ClpP | 8.34e-100 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| IFMEFEAN_72 | 23294 | 23686 | spxA1 | 4.11e-71 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| IFMEFEAN_72 | 23294 | 23686 | spx | 2.45e-69 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| IFMEFEAN_9 | 20501 | 20743 | SpoVG | 6.43e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| IFMEFEAN_35 | 2108 | 1911 | CspA | 3.36e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| IFMEFEAN_55 | 13073 | 13267 | CspD | 5.57e-29 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| IFMEFEAN_5 | 49220 | 49414 | CspB | 6.81e-28 | cold shock protein | 83.08 | 98.48 | CAD00094 |