Genome ID:GCA_035809065.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 12 | 10 | 8 | 17.55 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CGEIEKJE_4 | 685279 | 685617 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| CGEIEKJE_4 | 684962 | 685279 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| CGEIEKJE_1 | 258876 | 261446 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.88 | 100.00 | AL009126.3 |
| CGEIEKJE_2 | 204515 | 205684 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| CGEIEKJE_8 | 184287 | 185930 | vmlR | ARO:3004476 | vmlR | 98.72 | 100.00 | NC_000964.3 |
| CGEIEKJE_6 | 108152 | 109072 | mphK | ARO:3004541 | mphK | 99.35 | 100.00 | CP010314.1 |
| CGEIEKJE_6 | 94821 | 96260 | lmrB | ARO:3002813 | lmrB | 99.79 | 100.42 | JYFL01000006.1 |
| CGEIEKJE_6 | 45375 | 45968 | tmrB | ARO:3003059 | tmrB | 98.98 | 100.00 | AL009126.3 |
| CGEIEKJE_21 | 2950 | 3804 | aadK | ARO:3002627 | aadK | 98.24 | 100.00 | AL009126.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CGEIEKJE_3 | 34535 | 35911 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.20 | 100.00 | D12567 |
| CGEIEKJE_6 | 108152 | 109072 | mph(K) | Spiramycin, Telithromycin | 98.91 | 100.00 | NC_000964 |
| CGEIEKJE_21 | 2952 | 3804 | aadK | Streptomycin | 98.71 | 99.77 | M26879 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CGEIEKJE_6 | 108155 | 109072 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 99.35 | 100.00 | WP_003246254.1 |
| CGEIEKJE_3 | 34535 | 35908 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.91 | 100.00 | WP_063856081.1 |
| CGEIEKJE_8 | 184290 | 185930 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.72 | 100.00 | WP_003234144.1 |
| CGEIEKJE_21 | 2953 | 3804 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.24 | 100.00 | WP_003229862.1 |
| CGEIEKJE_3 | 37921 | 38439 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.17 | 100.00 | WP_003242546.1 |
| CGEIEKJE_4 | 1966 | 4563 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.37 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| CGEIEKJE_3 | 519016 | 520197 | capB | 0.0 | Capsule | Immune modulation | 99.75 | 100.00 | NP_391471 |
| CGEIEKJE_3 | 932590 | 933528 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.68 | 100.00 | NP_391077 |
| CGEIEKJE_3 | 928907 | 929692 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.62 | 100.00 | NP_391080 |
| CGEIEKJE_3 | 520212 | 520661 | capC | 0.0 | Capsule | Immune modulation | 99.56 | 100.00 | NP_391470 |
| CGEIEKJE_3 | 520680 | 521822 | capA | 0.0 | Capsule | Immune modulation | 99.39 | 100.00 | NP_391469 |
| CGEIEKJE_13 | 89343 | 89984 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.38 | 100.00 | NP_390062 |
| CGEIEKJE_3 | 929718 | 930914 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.00 | 100.00 | NP_391079 |
| CGEIEKJE_3 | 930943 | 932562 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.95 | 100.00 | NP_391078 |
| CGEIEKJE_3 | 933548 | 940684 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.80 | 100.00 | NP_391076 |
| CGEIEKJE_4 | 49737 | 51500 | dep/capD | 0.0 | Capsule | Immune modulation | 98.64 | 100.00 | NP_389723 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CGEIEKJE_10 | 31659 | 32795 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| CGEIEKJE_9 | 11312 | 10443 | pdxS | 1.13e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| CGEIEKJE_4 | 375438 | 374662 | CodY | 9.01e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| CGEIEKJE_3 | 667418 | 666849 | ClpP | 6.27e-99 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| CGEIEKJE_4 | 836132 | 835740 | spxA1 | 2.67e-69 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| CGEIEKJE_15 | 34646 | 34404 | SpoVG | 7.49e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| CGEIEKJE_8 | 137529 | 137726 | CspA | 9.28e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| CGEIEKJE_13 | 101947 | 102141 | CspD | 1.41e-28 | cold shock protein | 81.54 | 98.48 | CAC99957 |