Genome ID:GCA_035809255.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 11 | 10 | 7 | 16.43 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JJDPNKEB_5 | 684648 | 685817 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| JJDPNKEB_5 | 463438 | 464640 | blt | ARO:3003006 | blt | 99.25 | 100.00 | L32599.1 |
| JJDPNKEB_5 | 445070 | 445924 | aadK | ARO:3002627 | aadK | 98.94 | 100.00 | AL009126.1 |
| JJDPNKEB_1 | 355595 | 355933 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| JJDPNKEB_1 | 355278 | 355595 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| JJDPNKEB_7 | 256964 | 259534 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.88 | 100.00 | AL009126.3 |
| JJDPNKEB_6 | 194050 | 195693 | vmlR | ARO:3004476 | vmlR | 98.35 | 100.00 | NC_000964.3 |
| JJDPNKEB_4 | 108797 | 109717 | mphK | ARO:3004541 | mphK | 99.02 | 100.00 | CP010314.1 |
| JJDPNKEB_4 | 95463 | 96902 | lmrB | ARO:3002813 | lmrB | 99.37 | 100.42 | JYFL01000006.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JJDPNKEB_4 | 108797 | 109717 | mph(K) | Spiramycin, Telithromycin | 99.35 | 100.00 | NC_000964 |
| JJDPNKEB_5 | 445070 | 445924 | aadK | Streptomycin | 98.95 | 100.00 | M26879 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JJDPNKEB_4 | 108800 | 109717 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 99.02 | 100.00 | WP_003246254.1 |
| JJDPNKEB_5 | 445070 | 445921 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.94 | 100.00 | WP_003229862.1 |
| JJDPNKEB_6 | 194053 | 195693 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.35 | 100.00 | WP_003234144.1 |
| JJDPNKEB_2 | 38012 | 38530 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 93.64 | 100.00 | WP_003242546.1 |
| JJDPNKEB_5 | 979441 | 982038 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.65 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| JJDPNKEB_2 | 943588 | 944373 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.75 | 100.00 | NP_391080 |
| JJDPNKEB_2 | 521705 | 522886 | capB | 0.0 | Capsule | Immune modulation | 99.58 | 100.00 | NP_391471 |
| JJDPNKEB_5 | 883208 | 883849 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.38 | 100.00 | NP_390062 |
| JJDPNKEB_2 | 522901 | 523350 | capC | 0.0 | Capsule | Immune modulation | 99.33 | 100.00 | NP_391470 |
| JJDPNKEB_2 | 944399 | 945595 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.33 | 100.00 | NP_391079 |
| JJDPNKEB_2 | 523369 | 524511 | capA | 0.0 | Capsule | Immune modulation | 99.30 | 100.00 | NP_391469 |
| JJDPNKEB_5 | 1029637 | 1031400 | dep/capD | 0.0 | Capsule | Immune modulation | 99.04 | 100.00 | NP_389723 |
| JJDPNKEB_2 | 948229 | 955365 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.74 | 100.00 | NP_391076 |
| JJDPNKEB_2 | 947271 | 948209 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.40 | 100.00 | NP_391077 |
| JJDPNKEB_2 | 945624 | 947243 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.41 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JJDPNKEB_3 | 27969 | 26833 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| JJDPNKEB_9 | 11253 | 10384 | pdxS | 1.13e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| JJDPNKEB_1 | 44103 | 43327 | CodY | 6.35e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| JJDPNKEB_2 | 681003 | 680434 | ClpP | 6.36e-99 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| JJDPNKEB_1 | 505663 | 505271 | spxA1 | 4.99e-70 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| JJDPNKEB_1 | 505663 | 505271 | spx | 2.98e-68 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| JJDPNKEB_11 | 34794 | 34552 | SpoVG | 7.52e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| JJDPNKEB_6 | 145621 | 145818 | CspA | 9.71e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |