Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 2 | 6 | 7.48 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PJDNGGHJ_4 | 48063 | 49109 | clbA | ARO:3002814 | clbA | 92.77 | 99.71 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PJDNGGHJ_4 | 48066 | 49109 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.90 | 99.33 | KR610408 |
| PJDNGGHJ_1 | 361761 | 363137 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 87.36 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PJDNGGHJ_4 | 48066 | 49109 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 92.24 | 99.71 | WP_012116915.1 |
| PJDNGGHJ_1 | 361761 | 363131 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 87.09 | 99.78 | WP_003242953.1 |
| PJDNGGHJ_4 | 50860 | 51378 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 82.66 | 100.00 | WP_003242546.1 |
| PJDNGGHJ_5 | 488126 | 490723 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 81.06 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| PJDNGGHJ_2 | 484303 | 485484 | capB | 0.0 | Capsule | Immune modulation | 82.04 | 99.66 | NP_391471 |
| PJDNGGHJ_2 | 485499 | 485948 | capC | 3.93e-114 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PJDNGGHJ_12 | 27754 | 26618 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| PJDNGGHJ_13 | 4615 | 5484 | pdxS | 6.50e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| PJDNGGHJ_5 | 287014 | 287790 | CodY | 6.92e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| PJDNGGHJ_3 | 204996 | 204604 | spxA1 | 5.11e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| PJDNGGHJ_4 | 65596 | 65399 | CspA | 3.29e-32 | cold shock protein | 92.42 | 100.00 | CAA62903 |
| PJDNGGHJ_6 | 39852 | 39658 | CspB | 1.52e-27 | cold shock protein | 84.61 | 98.48 | CAD00094 |
| PJDNGGHJ_4 | 65596 | 65402 | CspR | 1.63e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |