Genome ID:GCA_035812245.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 10 | 10 | 9 | 16.76 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IOCDEKDB_54 | 59496 | 62066 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.53 | 100.00 | AL009126.3 |
| IOCDEKDB_8 | 40978 | 41898 | mphK | ARO:3004541 | mphK | 98.68 | 100.00 | CP010314.1 |
| IOCDEKDB_18 | 40674 | 41012 | ykkC | ARO:3003063 | ykkC | 98.21 | 100.00 | AL009126.1 |
| IOCDEKDB_18 | 40357 | 40674 | ykkD | ARO:3003064 | ykkD | 98.10 | 100.00 | AL009126.1 |
| IOCDEKDB_12 | 28568 | 30214 | vmlR | ARO:3004476 | vmlR | 98.36 | 100.18 | NC_000964.3 |
| IOCDEKDB_8 | 27644 | 29083 | lmrB | ARO:3002813 | lmrB | 99.58 | 100.42 | JYFL01000006.1 |
| IOCDEKDB_2 | 23943 | 24797 | aadK | ARO:3002627 | aadK | 98.59 | 100.00 | AL009126.1 |
| IOCDEKDB_2 | 6846 | 8048 | blt | ARO:3003006 | blt | 98.00 | 100.00 | L32599.1 |
| IOCDEKDB_11 | 872 | 1465 | tmrB | ARO:3003059 | tmrB | 99.49 | 100.00 | AL009126.3 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IOCDEKDB_2 | 23943 | 24797 | aadK | Streptomycin | 98.83 | 100.00 | M26879 |
| IOCDEKDB_8 | 40978 | 41898 | mph(K) | Spiramycin, Telithromycin | 98.05 | 100.00 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IOCDEKDB_8 | 40990 | 41898 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 98.68 | 99.02 | WP_003246254.1 |
| IOCDEKDB_2 | 23946 | 24797 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.59 | 100.00 | WP_003229862.1 |
| IOCDEKDB_12 | 28568 | 30211 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.36 | 100.00 | WP_003234144.1 |
| IOCDEKDB_7 | 40788 | 41306 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.75 | 100.00 | WP_003242546.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| IOCDEKDB_10 | 29562 | 30743 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| IOCDEKDB_26 | 22953 | 23738 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.49 | 100.00 | NP_391080 |
| IOCDEKDB_10 | 27937 | 29079 | capA | 0.0 | Capsule | Immune modulation | 99.30 | 100.00 | NP_391469 |
| IOCDEKDB_26 | 27594 | 34730 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.30 | 100.00 | NP_391076 |
| IOCDEKDB_75 | 19698 | 21461 | dep/capD | 0.0 | Capsule | Immune modulation | 99.04 | 100.00 | NP_389723 |
| IOCDEKDB_26 | 26636 | 27574 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.04 | 100.00 | NP_391077 |
| IOCDEKDB_26 | 23764 | 24960 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.00 | 100.00 | NP_391079 |
| IOCDEKDB_24 | 144041 | 144682 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 98.91 | 100.00 | NP_390062 |
| IOCDEKDB_10 | 29098 | 29547 | capC | 0.0 | Capsule | Immune modulation | 98.89 | 100.00 | NP_391470 |
| IOCDEKDB_26 | 24989 | 26608 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 96.73 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IOCDEKDB_35 | 28229 | 27093 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| IOCDEKDB_61 | 4429 | 5298 | pdxS | 1.98e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.45 | 98.31 | ACE61268 |
| IOCDEKDB_13 | 151478 | 152254 | CodY | 2.01e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| IOCDEKDB_57 | 4348 | 4917 | ClpP | 2.96e-100 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| IOCDEKDB_49 | 41544 | 41152 | spxA1 | 4.12e-71 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| IOCDEKDB_49 | 41544 | 41152 | spx | 2.46e-69 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| IOCDEKDB_23 | 34705 | 34463 | SpoVG | 7.52e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| IOCDEKDB_36 | 40546 | 40349 | CspA | 2.35e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| IOCDEKDB_24 | 132811 | 132617 | CspD | 1.09e-28 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| IOCDEKDB_16 | 32217 | 32023 | CspB | 4.54e-28 | cold shock protein | 83.08 | 98.48 | CAD00094 |