Genome ID:GCA_035812295.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 10 | 10 | 9 | 16.76 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OICBPDGN_48 | 84755 | 85093 | ykkC | ARO:3003063 | ykkC | 98.21 | 100.00 | AL009126.1 |
| OICBPDGN_48 | 84438 | 84755 | ykkD | ARO:3003064 | ykkD | 98.10 | 100.00 | AL009126.1 |
| OICBPDGN_3 | 59870 | 61516 | vmlR | ARO:3004476 | vmlR | 98.36 | 100.18 | NC_000964.3 |
| OICBPDGN_40 | 47999 | 49438 | lmrB | ARO:3002813 | lmrB | 99.58 | 100.42 | JYFL01000006.1 |
| OICBPDGN_40 | 35184 | 36104 | mphK | ARO:3004541 | mphK | 98.68 | 100.00 | CP010314.1 |
| OICBPDGN_16 | 27309 | 29879 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.53 | 100.00 | AL009126.3 |
| OICBPDGN_12 | 23942 | 24796 | aadK | ARO:3002627 | aadK | 98.59 | 100.00 | AL009126.1 |
| OICBPDGN_15 | 19002 | 19595 | tmrB | ARO:3003059 | tmrB | 99.49 | 100.00 | AL009126.3 |
| OICBPDGN_12 | 6845 | 8047 | blt | ARO:3003006 | blt | 98.00 | 100.00 | L32599.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OICBPDGN_12 | 23942 | 24796 | aadK | Streptomycin | 98.83 | 100.00 | M26879 |
| OICBPDGN_40 | 35184 | 36104 | mph(K) | Spiramycin, Telithromycin | 98.05 | 100.00 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OICBPDGN_40 | 35184 | 36092 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 98.68 | 99.02 | WP_003246254.1 |
| OICBPDGN_12 | 23945 | 24796 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.59 | 100.00 | WP_003229862.1 |
| OICBPDGN_3 | 59873 | 61516 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.36 | 100.00 | WP_003234144.1 |
| OICBPDGN_9 | 40885 | 41403 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.75 | 100.00 | WP_003242546.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| OICBPDGN_8 | 29572 | 30753 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| OICBPDGN_26 | 35582 | 36367 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.49 | 100.00 | NP_391080 |
| OICBPDGN_8 | 27947 | 29089 | capA | 0.0 | Capsule | Immune modulation | 99.30 | 100.00 | NP_391469 |
| OICBPDGN_26 | 24590 | 31726 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.30 | 100.00 | NP_391076 |
| OICBPDGN_67 | 19800 | 21563 | dep/capD | 0.0 | Capsule | Immune modulation | 99.04 | 100.00 | NP_389723 |
| OICBPDGN_26 | 31746 | 32684 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.04 | 100.00 | NP_391077 |
| OICBPDGN_26 | 34360 | 35556 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.00 | 100.00 | NP_391079 |
| OICBPDGN_30 | 32646 | 33287 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 98.91 | 100.00 | NP_390062 |
| OICBPDGN_8 | 29108 | 29557 | capC | 0.0 | Capsule | Immune modulation | 98.89 | 100.00 | NP_391470 |
| OICBPDGN_26 | 32712 | 34331 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 96.73 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OICBPDGN_6 | 31926 | 33062 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| OICBPDGN_64 | 11359 | 10490 | pdxS | 1.95e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.45 | 98.31 | ACE61268 |
| OICBPDGN_7 | 116467 | 117243 | CodY | 1.70e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| OICBPDGN_24 | 4347 | 4916 | ClpP | 2.96e-100 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| OICBPDGN_83 | 3747 | 4139 | spxA1 | 2.93e-72 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| OICBPDGN_83 | 3747 | 4139 | spx | 1.75e-70 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| OICBPDGN_29 | 20616 | 20858 | SpoVG | 7.51e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| OICBPDGN_3 | 13880 | 14077 | CspA | 3.90e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| OICBPDGN_30 | 44517 | 44711 | CspD | 4.65e-29 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| OICBPDGN_74 | 32004 | 31810 | CspB | 3.77e-28 | cold shock protein | 83.08 | 98.48 | CAD00094 |