Genome ID:GCA_035812495.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 8 | 10 | 9 | 15.65 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GKCKKNLO_12 | 100459 | 100776 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| GKCKKNLO_12 | 100121 | 100459 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| GKCKKNLO_5 | 9359 | 11929 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.65 | 100.00 | AL009126.3 |
| GKCKKNLO_22 | 9011 | 10180 | bmr | ARO:3003007 | bmr | 99.49 | 100.00 | M33768.1 |
| GKCKKNLO_146 | 1154 | 2008 | aadK | ARO:3002627 | aadK | 98.94 | 100.00 | AL009126.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GKCKKNLO_32 | 34550 | 35926 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.35 | 100.00 | X08034 |
| GKCKKNLO_146 | 1154 | 2006 | aadK | Streptomycin | 99.06 | 99.77 | M26879 |
| GKCKKNLO_1 | 39137 | 40056 | mph(K) | Spiramycin, Telithromycin | 97.61 | 99.89 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GKCKKNLO_32 | 34550 | 35923 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.13 | 100.00 | WP_003242953.1 |
| GKCKKNLO_146 | 1154 | 2005 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.94 | 100.00 | WP_003229862.1 |
| GKCKKNLO_32 | 37907 | 38425 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.17 | 100.00 | WP_003242546.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| GKCKKNLO_7 | 73471 | 74409 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.68 | 100.00 | NP_391077 |
| GKCKKNLO_26 | 1601 | 2743 | capA | 0.0 | Capsule | Immune modulation | 99.65 | 100.00 | NP_391469 |
| GKCKKNLO_26 | 3226 | 4407 | capB | 0.0 | Capsule | Immune modulation | 99.58 | 100.00 | NP_391471 |
| GKCKKNLO_26 | 2762 | 3211 | capC | 0.0 | Capsule | Immune modulation | 99.56 | 100.00 | NP_391470 |
| GKCKKNLO_61 | 12477 | 13118 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.53 | 100.00 | NP_390062 |
| GKCKKNLO_7 | 77307 | 78092 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.49 | 100.00 | NP_391080 |
| GKCKKNLO_57 | 11052 | 12815 | dep/capD | 0.0 | Capsule | Immune modulation | 99.21 | 100.00 | NP_389723 |
| GKCKKNLO_7 | 66315 | 73451 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.78 | 100.00 | NP_391076 |
| GKCKKNLO_7 | 76085 | 77281 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.00 | 100.00 | NP_391079 |
| GKCKKNLO_7 | 74437 | 76056 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.84 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GKCKKNLO_8 | 2910 | 4046 | tufA | 0.0 | elongation factor Tu | 85.75 | 95.69 | AHM69299 |
| GKCKKNLO_41 | 11284 | 10415 | pdxS | 1.96e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.45 | 98.31 | ACE61268 |
| GKCKKNLO_40 | 970 | 194 | CodY | 3.98e-126 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| GKCKKNLO_2 | 80612 | 80043 | ClpP | 7.85e-100 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| GKCKKNLO_35 | 51968 | 52360 | spxA1 | 5.78e-71 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| GKCKKNLO_35 | 51968 | 52360 | spx | 3.45e-69 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| GKCKKNLO_31 | 7924 | 8166 | SpoVG | 5.78e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| GKCKKNLO_205 | 946 | 1143 | CspA | 9.23e-35 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| GKCKKNLO_61 | 1245 | 1051 | CspD | 9.16e-30 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| GKCKKNLO_47 | 47568 | 47762 | CspB | 5.37e-28 | cold shock protein | 83.08 | 98.48 | CAD00094 |