Genome ID：GCA_035812755.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
4	2	6	7.48

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
LOPLIDCK_13	48071	49117	clbA	ARO:3002814	clbA	92.77	99.71	CP006845.1

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
LOPLIDCK_13	48074	49117	cfr(B)	Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin	88.90	99.33	KR610408
LOPLIDCK_11	176526	177902	tet(L)	Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline	87.07	100.00	X08034

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
LOPLIDCK_13	48074	49117	clbA	23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA	BLASTX	92.24	99.71	WP_012116915.1
LOPLIDCK_11	176526	177896	tet(L)	tetracycline efflux MFS transporter Tet(L)	BLASTX	86.43	99.78	WP_003242953.1
LOPLIDCK_13	50868	51386	satA	streptothricin N-acetyltransferase SatA	BLASTX	82.66	100.00	WP_003242546.1
LOPLIDCK_8	276624	279221	rphC	rifamycin-inactivating phosphotransferase RphC	INTERNAL_STOP	80.94	100.00	WP_087347987.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
LOPLIDCK_4	377360	378541	capB	0.0	Capsule	Immune modulation	81.79	99.66	NP_391471
LOPLIDCK_4	378556	379005	capC	1.75e-114	Capsule	Immune modulation	83.59	99.78	NP_391470

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
LOPLIDCK_5	27633	26497	tufA	0.0	elongation factor Tu	86.54	95.69	AHM69299
LOPLIDCK_22	4254	5123	pdxS	6.31e-153	encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS	84.83	98.31	ACE61268
LOPLIDCK_8	72504	73280	CodY	8.18e-125	nutrient-responsive regulator	80.69	100.00	ACJ80679
LOPLIDCK_1	327089	327481	spxA1	9.08e-70	redox-responsive transcription factor	83.21	100.00	AAF21893
LOPLIDCK_13	65603	65406	CspA	3.14e-32	cold shock protein	92.42	100.00	CAA62903
LOPLIDCK_11	550116	549922	CspD	1.68e-27	cold shock protein	80.00	98.48	CAC99957
LOPLIDCK_11	550116	549919	CspB	3.49e-27	cold shock protein	80.30	100.00	CAD00094
LOPLIDCK_13	65603	65409	CspR	1.56e-26	cold shock protein	80.00	98.48	AAO82613