Genome ID:GCA_035812775.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 10 | 10 | 9 | 16.76 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NHAKPCLB_7 | 62273 | 62590 | ykkD | ARO:3003064 | ykkD | 98.10 | 100.00 | AL009126.1 |
| NHAKPCLB_7 | 61935 | 62273 | ykkC | ARO:3003063 | ykkC | 98.21 | 100.00 | AL009126.1 |
| NHAKPCLB_45 | 60973 | 62175 | blt | ARO:3003006 | blt | 98.00 | 100.00 | L32599.1 |
| NHAKPCLB_28 | 47644 | 49083 | lmrB | ARO:3002813 | lmrB | 99.58 | 100.42 | JYFL01000006.1 |
| NHAKPCLB_45 | 44224 | 45078 | aadK | ARO:3002627 | aadK | 98.59 | 100.00 | AL009126.1 |
| NHAKPCLB_28 | 34829 | 35749 | mphK | ARO:3004541 | mphK | 98.68 | 100.00 | CP010314.1 |
| NHAKPCLB_29 | 27256 | 29826 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.53 | 100.00 | AL009126.3 |
| NHAKPCLB_60 | 19004 | 19597 | tmrB | ARO:3003059 | tmrB | 99.49 | 100.00 | AL009126.3 |
| NHAKPCLB_50 | 5829 | 7475 | vmlR | ARO:3004476 | vmlR | 98.36 | 100.18 | NC_000964.3 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NHAKPCLB_45 | 44224 | 45078 | aadK | Streptomycin | 98.83 | 100.00 | M26879 |
| NHAKPCLB_28 | 34829 | 35749 | mph(K) | Spiramycin, Telithromycin | 98.05 | 100.00 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NHAKPCLB_28 | 34829 | 35737 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 98.68 | 99.02 | WP_003246254.1 |
| NHAKPCLB_45 | 44224 | 45075 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.59 | 100.00 | WP_003229862.1 |
| NHAKPCLB_50 | 5832 | 7475 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.36 | 100.00 | WP_003234144.1 |
| NHAKPCLB_6 | 51079 | 51597 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.75 | 100.00 | WP_003242546.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| NHAKPCLB_14 | 29667 | 30848 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| NHAKPCLB_2 | 112948 | 113733 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.49 | 100.00 | NP_391080 |
| NHAKPCLB_14 | 28042 | 29184 | capA | 0.0 | Capsule | Immune modulation | 99.30 | 100.00 | NP_391469 |
| NHAKPCLB_2 | 101956 | 109092 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.30 | 100.00 | NP_391076 |
| NHAKPCLB_30 | 19837 | 21600 | dep/capD | 0.0 | Capsule | Immune modulation | 99.04 | 100.00 | NP_389723 |
| NHAKPCLB_2 | 109112 | 110050 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.04 | 100.00 | NP_391077 |
| NHAKPCLB_2 | 111726 | 112922 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.00 | 100.00 | NP_391079 |
| NHAKPCLB_38 | 144133 | 144774 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 98.91 | 100.00 | NP_390062 |
| NHAKPCLB_14 | 29203 | 29652 | capC | 0.0 | Capsule | Immune modulation | 98.89 | 100.00 | NP_391470 |
| NHAKPCLB_2 | 110078 | 111697 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 96.73 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NHAKPCLB_24 | 31853 | 32989 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| NHAKPCLB_26 | 4326 | 5195 | pdxS | 1.98e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.45 | 98.31 | ACE61268 |
| NHAKPCLB_19 | 93966 | 93190 | CodY | 1.99e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| NHAKPCLB_42 | 4413 | 4982 | ClpP | 2.96e-100 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| NHAKPCLB_25 | 23413 | 23805 | spxA1 | 4.12e-71 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| NHAKPCLB_25 | 23413 | 23805 | spx | 2.46e-69 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| NHAKPCLB_31 | 34800 | 34558 | SpoVG | 7.52e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| NHAKPCLB_62 | 10981 | 11178 | CspA | 2.22e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| NHAKPCLB_38 | 132903 | 132709 | CspD | 1.09e-28 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| NHAKPCLB_5 | 13906 | 14100 | CspB | 4.22e-28 | cold shock protein | 83.08 | 98.48 | CAD00094 |