Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 2 | 6 | 7.48 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OGMIPIDP_4 | 48106 | 49152 | clbA | ARO:3002814 | clbA | 92.77 | 99.71 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OGMIPIDP_4 | 48109 | 49152 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.90 | 99.33 | KR610408 |
| OGMIPIDP_3 | 144406 | 145782 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 87.15 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OGMIPIDP_4 | 48109 | 49152 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 92.24 | 99.71 | WP_012116915.1 |
| OGMIPIDP_3 | 144412 | 145782 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.43 | 99.78 | WP_003242953.1 |
| OGMIPIDP_4 | 50903 | 51421 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 82.66 | 100.00 | WP_003242546.1 |
| OGMIPIDP_13 | 206958 | 209555 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 81.06 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| OGMIPIDP_6 | 497670 | 498851 | capB | 0.0 | Capsule | Immune modulation | 81.87 | 99.66 | NP_391471 |
| OGMIPIDP_6 | 497206 | 497655 | capC | 3.25e-114 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OGMIPIDP_18 | 27598 | 26462 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| OGMIPIDP_17 | 4317 | 5186 | pdxS | 6.50e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| OGMIPIDP_5 | 126534 | 125758 | CodY | 6.80e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| OGMIPIDP_1 | 288833 | 289225 | spxA1 | 4.31e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| OGMIPIDP_4 | 65648 | 65451 | CspA | 3.19e-32 | cold shock protein | 92.42 | 100.00 | CAA62903 |
| OGMIPIDP_10 | 164741 | 164547 | CspD | 6.92e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| OGMIPIDP_10 | 164741 | 164544 | CspB | 1.44e-27 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| OGMIPIDP_4 | 65648 | 65454 | CspR | 1.58e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |