Genome ID:GCA_035814195.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 13 | 10 | 9 | 18.71 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JJNMJNJD_11 | 697186 | 698355 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| JJNMJNJD_11 | 523902 | 525104 | blt | ARO:3003006 | blt | 99.75 | 100.00 | L32599.1 |
| JJNMJNJD_11 | 507180 | 508034 | aadK | ARO:3002627 | aadK | 97.18 | 100.00 | AL009126.1 |
| JJNMJNJD_4 | 194265 | 195911 | vmlR | ARO:3004476 | vmlR | 99.45 | 100.18 | NC_000964.3 |
| JJNMJNJD_8 | 187584 | 190154 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.77 | 100.00 | AL009126.3 |
| JJNMJNJD_14 | 113947 | 114867 | mphK | ARO:3004541 | mphK | 98.69 | 100.00 | CP010314.1 |
| JJNMJNJD_17 | 110928 | 111245 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| JJNMJNJD_17 | 110590 | 110928 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| JJNMJNJD_14 | 100614 | 102053 | lmrB | ARO:3002813 | lmrB | 99.58 | 100.42 | JYFL01000006.1 |
| JJNMJNJD_14 | 50904 | 51497 | tmrB | ARO:3003059 | tmrB | 97.46 | 100.00 | AL009126.3 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JJNMJNJD_14 | 113947 | 114867 | mph(K) | Spiramycin, Telithromycin | 99.35 | 100.00 | NC_000964 |
| JJNMJNJD_1 | 34425 | 35801 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.13 | 100.00 | X08034 |
| JJNMJNJD_11 | 507180 | 508034 | aadK | Streptomycin | 98.25 | 100.00 | M26879 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JJNMJNJD_4 | 194268 | 195911 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 99.45 | 100.00 | WP_003234144.1 |
| JJNMJNJD_1 | 34425 | 35798 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.13 | 100.00 | WP_003242953.1 |
| JJNMJNJD_14 | 113950 | 114867 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 98.69 | 100.00 | WP_003246254.1 |
| JJNMJNJD_11 | 507180 | 508031 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 97.18 | 100.00 | WP_003229862.1 |
| JJNMJNJD_1 | 37769 | 38287 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 93.06 | 100.00 | WP_003242546.1 |
| JJNMJNJD_19 | 5133 | 7730 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.76 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| JJNMJNJD_11 | 895015 | 895656 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.84 | 100.00 | NP_390062 |
| JJNMJNJD_1 | 527762 | 528943 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| JJNMJNJD_1 | 946951 | 947736 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.62 | 100.00 | NP_391080 |
| JJNMJNJD_19 | 60199 | 61962 | dep/capD | 0.0 | Capsule | Immune modulation | 99.26 | 100.00 | NP_389723 |
| JJNMJNJD_1 | 950634 | 951572 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.25 | 100.00 | NP_391077 |
| JJNMJNJD_1 | 529426 | 530568 | capA | 0.0 | Capsule | Immune modulation | 99.04 | 100.00 | NP_391469 |
| JJNMJNJD_1 | 528958 | 529407 | capC | 0.0 | Capsule | Immune modulation | 98.89 | 100.00 | NP_391470 |
| JJNMJNJD_1 | 951592 | 958728 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.58 | 100.00 | NP_391076 |
| JJNMJNJD_1 | 947762 | 948958 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.50 | 100.00 | NP_391079 |
| JJNMJNJD_1 | 948987 | 950606 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.16 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JJNMJNJD_24 | 31658 | 32794 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| JJNMJNJD_15 | 11329 | 10460 | pdxS | 1.12e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| JJNMJNJD_12 | 56212 | 56988 | CodY | 2.00e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| JJNMJNJD_1 | 685515 | 684946 | ClpP | 6.38e-99 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| JJNMJNJD_7 | 218505 | 218897 | spxA1 | 1.63e-70 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| JJNMJNJD_7 | 218505 | 218897 | spx | 9.71e-69 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| JJNMJNJD_13 | 34692 | 34450 | SpoVG | 7.49e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| JJNMJNJD_4 | 145746 | 145943 | CspA | 9.71e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| JJNMJNJD_10 | 31576 | 31382 | CspB | 5.56e-28 | cold shock protein | 83.08 | 98.48 | CAD00094 |
| JJNMJNJD_11 | 883786 | 883592 | CspD | 2.35e-27 | cold shock protein | 80.00 | 98.48 | CAC99957 |