Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 2 | 6 | 7.48 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ONCKDIPA_2 | 159903 | 160949 | clbA | ARO:3002814 | clbA | 92.77 | 99.71 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| ONCKDIPA_2 | 159903 | 160946 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.90 | 99.33 | KR610408 |
| ONCKDIPA_10 | 59145 | 60521 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 87.36 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ONCKDIPA_2 | 159903 | 160946 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 92.24 | 99.71 | WP_012116915.1 |
| ONCKDIPA_10 | 59145 | 60515 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 87.09 | 99.78 | WP_003242953.1 |
| ONCKDIPA_2 | 157636 | 158154 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 82.66 | 100.00 | WP_003242546.1 |
| ONCKDIPA_7 | 145953 | 148550 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 81.06 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| ONCKDIPA_4 | 377030 | 378211 | capB | 0.0 | Capsule | Immune modulation | 81.87 | 99.66 | NP_391471 |
| ONCKDIPA_4 | 378226 | 378675 | capC | 3.45e-114 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ONCKDIPA_8 | 31664 | 32800 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| ONCKDIPA_19 | 12463 | 11594 | pdxS | 8.83e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.48 | 98.31 | ACE61268 |
| ONCKDIPA_1 | 55133 | 54357 | CodY | 6.55e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| ONCKDIPA_1 | 532284 | 531892 | spxA1 | 1.03e-69 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| ONCKDIPA_2 | 143403 | 143600 | CspA | 3.19e-32 | cold shock protein | 92.42 | 100.00 | CAA62903 |
| ONCKDIPA_6 | 164571 | 164377 | CspD | 6.81e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| ONCKDIPA_6 | 164571 | 164374 | CspB | 1.41e-27 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| ONCKDIPA_2 | 143403 | 143597 | CspR | 1.58e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |