Genome ID：GCA_036208645.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
5	2	6	8.06

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
PIBGAFCF_30	47727	48773	clbA	ARO:3002814	clbA	92.77	99.71	CP006845.1

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
PIBGAFCF_30	47730	48773	cfr(B)	Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin	88.90	99.33	KR610408
PIBGAFCF_21	8192	9568	tet(L)	Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline	87.07	100.00	X08034

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
PIBGAFCF_30	47730	48773	clbA	23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA	BLASTX	92.24	99.71	WP_012116915.1
PIBGAFCF_21	8198	9568	tet(L)	tetracycline efflux MFS transporter Tet(L)	BLASTX	86.43	99.78	WP_003242953.1
PIBGAFCF_30	50524	51042	satA	streptothricin N-acetyltransferase SatA	BLASTX	82.66	100.00	WP_003242546.1
PIBGAFCF_11	2619	5216	rphC	rifamycin-inactivating phosphotransferase RphC	BLASTX	81.06	100.00	WP_087347987.1
PIBGAFCF_21	9869	10297	satA	streptothricin N-acetyltransferase SatA	PARTIALX	80.42	82.66	WP_003242546.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
PIBGAFCF_4	137009	138190	capB	0.0	Capsule	Immune modulation	81.87	99.66	NP_391471
PIBGAFCF_4	136545	136994	capC	1.10e-114	Capsule	Immune modulation	83.59	99.78	NP_391470

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
PIBGAFCF_15	31665	32801	tufA	0.0	elongation factor Tu	86.54	95.69	AHM69299
PIBGAFCF_37	12392	11523	pdxS	6.36e-153	encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS	84.83	98.31	ACE61268
PIBGAFCF_2	55153	54377	CodY	6.41e-125	nutrient-responsive regulator	81.08	100.00	ACJ80679
PIBGAFCF_2	515613	515221	spxA1	1.01e-69	redox-responsive transcription factor	83.21	100.00	AAF21893
PIBGAFCF_30	65274	65077	CspA	1.06e-32	cold shock protein	92.42	100.00	CAA62903
PIBGAFCF_14	335222	335028	CspD	1.12e-27	cold shock protein	80.00	98.48	CAC99957
PIBGAFCF_14	335222	335025	CspB	2.32e-27	cold shock protein	80.30	100.00	CAD00094
PIBGAFCF_30	65274	65080	CspR	5.25e-27	cold shock protein	80.00	98.48	AAO82613