Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 2 | 7 | 8.31 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PKJAKLKL_13 | 48012 | 49058 | clbA | ARO:3002814 | clbA | 92.77 | 99.71 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PKJAKLKL_13 | 48015 | 49058 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.90 | 99.33 | KR610408 |
| PKJAKLKL_8 | 528272 | 529648 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 87.15 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PKJAKLKL_13 | 48015 | 49058 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 92.24 | 99.71 | WP_012116915.1 |
| PKJAKLKL_8 | 528278 | 529648 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.43 | 99.78 | WP_003242953.1 |
| PKJAKLKL_13 | 50809 | 51327 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 82.66 | 100.00 | WP_003242546.1 |
| PKJAKLKL_18 | 146022 | 148619 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 81.06 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| PKJAKLKL_3 | 377239 | 378420 | capB | 0.0 | Capsule | Immune modulation | 81.87 | 99.66 | NP_391471 |
| PKJAKLKL_3 | 378435 | 378884 | capC | 2.73e-114 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PKJAKLKL_14 | 27529 | 26393 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| PKJAKLKL_24 | 4254 | 5123 | pdxS | 6.31e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| PKJAKLKL_1 | 63613 | 62837 | CodY | 3.30e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| PKJAKLKL_2 | 41588 | 41196 | spxA1 | 2.98e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| PKJAKLKL_13 | 65554 | 65357 | CspA | 2.73e-32 | cold shock protein | 92.42 | 100.00 | CAA62903 |
| PKJAKLKL_8 | 104818 | 105012 | CspD | 1.84e-27 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| PKJAKLKL_22 | 26552 | 26746 | CspB | 1.95e-27 | cold shock protein | 84.61 | 98.48 | CAD00094 |
| PKJAKLKL_13 | 65554 | 65360 | CspR | 1.35e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |