Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 2 | 6 | 7.48 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NFKMLMMI_6 | 139438 | 140482 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.81 | 99.33 | KR610408 |
| NFKMLMMI_1 | 87560 | 88936 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 87.15 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NFKMLMMI_1 | 87560 | 88930 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.43 | 99.78 | WP_003242953.1 |
| NFKMLMMI_6 | 137169 | 137687 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 82.66 | 100.00 | WP_003242546.1 |
| NFKMLMMI_23 | 21930 | 24527 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 81.06 | 100.00 | WP_087347987.1 |
| NFKMLMMI_6 | 139832 | 140482 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | PARTIALX | 91.71 | 62.18 | WP_012116915.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| NFKMLMMI_32 | 158846 | 160027 | capB | 0.0 | Capsule | Immune modulation | 81.87 | 99.66 | NP_391471 |
| NFKMLMMI_32 | 158382 | 158831 | capC | 7.69e-115 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NFKMLMMI_17 | 31663 | 32799 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| NFKMLMMI_8 | 12480 | 11611 | pdxS | 6.35e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| NFKMLMMI_7 | 45934 | 46710 | CodY | 1.42e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| NFKMLMMI_41 | 31320 | 30928 | spxA1 | 4.43e-71 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| NFKMLMMI_6 | 122942 | 123139 | CspA | 2.57e-32 | cold shock protein | 92.42 | 100.00 | CAA62903 |
| NFKMLMMI_39 | 28112 | 27918 | CspD | 1.47e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| NFKMLMMI_39 | 28112 | 27915 | CspB | 3.05e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| NFKMLMMI_6 | 122942 | 123136 | CspR | 1.27e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |