Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 1 | 4 | 5.74 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LNEOGEMI_40 | 37534 | 38304 | ANT(4')-Ib | ARO:3003905 | ANT(4')-Ib | 94.14 | 100.00 | EF540343.1 |
| LNEOGEMI_43 | 35017 | 35862 | Erm(34) | ARO:3000600 | Erm(34) | 98.58 | 100.00 | AY234334.1 |
| LNEOGEMI_45 | 5955 | 7007 | clbC | ARO:3002816 | clbC | 97.14 | 100.00 | AP006627.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LNEOGEMI_43 | 35017 | 35862 | erm(34) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.87 | 100.00 | AY234334 |
| LNEOGEMI_40 | 37534 | 38304 | ant(4')-Ib | Amikacin, Tobramycin, Isepamicin, Dibekacin | 94.16 | 100.00 | AJ506108 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LNEOGEMI_43 | 35017 | 35859 | erm(34) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(34) | BLASTX | 98.58 | 100.00 | WP_063844504.1 |
| LNEOGEMI_45 | 5955 | 7004 | clbB | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbB | BLASTX | 97.14 | 100.00 | WP_011245929.1 |
| LNEOGEMI_40 | 34218 | 35120 | blaBCL | BCL family class A beta-lactamase | BLASTX | 96.68 | 100.00 | WP_065825670.1 |
| LNEOGEMI_40 | 37537 | 38304 | aadD2 | aminoglycoside O-nucleotidyltransferase ANT(4')-Ib | BLASTX | 94.14 | 100.00 | WP_035202393.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| LNEOGEMI_35 | 17993 | 18643 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 96.77 | 100.00 | WP_011247375 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LNEOGEMI_10 | 32581 | 33723 | tufA | 0.0 | elongation factor Tu | 87.14 | 96.19 | AHM69299 |
| LNEOGEMI_42 | 36203 | 36445 | SpoVG | 1.70e-37 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| LNEOGEMI_36 | 21361 | 21164 | CspA | 4.31e-31 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| LNEOGEMI_28 | 156503 | 156315 | CspB | 2.18e-25 | cold shock protein | 82.54 | 95.45 | CAD00094 |