Genome ID：GCA_036231745.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
13	10	7	17.83

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
PLHLKKDO_1	1810267	1810605	ykkC	ARO:3003063	ykkC	100.00	100.00	AL009126.1
PLHLKKDO_1	1809950	1810267	ykkD	ARO:3003064	ykkD	99.05	100.00	AL009126.1
PLHLKKDO_1	698614	699783	bmr	ARO:3003007	bmr	99.74	100.00	M33768.1
PLHLKKDO_1	504178	505380	blt	ARO:3003006	blt	100.00	100.00	L32599.1
PLHLKKDO_1	485789	486643	aadK	ARO:3002627	aadK	97.89	100.00	AL009126.1
PLHLKKDO_3	162521	163114	tmrB	ARO:3003059	tmrB	97.97	100.00	AL009126.3
PLHLKKDO_4	117820	120390	Bacillus subtilis mprF	ARO:3003324	Bsub_mprF	99.77	100.00	AL009126.3
PLHLKKDO_3	112045	113484	lmrB	ARO:3002813	lmrB	99.37	100.42	JYFL01000006.1
PLHLKKDO_3	99231	100151	mphK	ARO:3004541	mphK	98.04	100.00	CP010314.1
PLHLKKDO_6	28897	30543	vmlR	ARO:3004476	vmlR	98.54	100.18	NC_000964.3

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
PLHLKKDO_2	995119	996495	tet(L)	Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline	100.00	100.00	D12567
PLHLKKDO_1	485789	486641	aadK	Streptomycin	98.59	99.77	M26879
PLHLKKDO_3	99231	100151	mph(K)	Spiramycin, Telithromycin	97.83	100.00	NC_000964

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
PLHLKKDO_2	995122	996495	tet(L)	tetracycline efflux MFS transporter Tet(L)	EXACTX	100.00	100.00	WP_063856081.1
PLHLKKDO_6	28897	30540	vmlR	ABC-F type ribosomal protection protein VmlR	BLASTX	98.54	100.00	WP_003234144.1
PLHLKKDO_3	99231	100148	mphK	macrolide 2'-phosphotransferase MphK	BLASTX	98.04	100.00	WP_003246254.1
PLHLKKDO_1	485789	486640	aadK	aminoglycoside 6-adenylyltransferase AadK	BLASTX	97.89	100.00	WP_003229862.1
PLHLKKDO_2	992621	993139	satA	streptothricin N-acetyltransferase SatA	BLASTX	90.17	100.00	WP_003242546.1
PLHLKKDO_1	994781	997378	rphC	rifamycin-inactivating phosphotransferase RphC	BLASTX	80.60	100.00	WP_087347987.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
PLHLKKDO_2	109005	109943	dhbB	0.0	Bacillibactin	Nutritional/Metabolic factor	99.68	100.00	NP_391077
PLHLKKDO_2	504913	506094	capB	0.0	Capsule	Immune modulation	99.66	100.00	NP_391471
PLHLKKDO_2	109971	111590	dhbE	0.0	Bacillibactin	Nutritional/Metabolic factor	99.26	100.00	NP_391078
PLHLKKDO_2	112841	113626	dhbA	0.0	Bacillibactin	Nutritional/Metabolic factor	99.24	100.00	NP_391080
PLHLKKDO_1	900590	901231	hlyIII	0.0	Hemolysin III	Exotoxin	99.22	100.00	NP_390062
PLHLKKDO_2	503288	504430	capA	0.0	Capsule	Immune modulation	98.95	100.00	NP_391469
PLHLKKDO_2	111619	112815	dhbC	0.0	Bacillibactin	Nutritional/Metabolic factor	98.91	100.00	NP_391079
PLHLKKDO_1	1042556	1044319	dep/capD	0.0	Capsule	Immune modulation	98.87	100.00	NP_389723
PLHLKKDO_2	101849	108985	dhbF	0.0	Bacillibactin	Nutritional/Metabolic factor	98.86	100.00	NP_391076
PLHLKKDO_2	504449	504898	capC	0.0	Capsule	Immune modulation	98.67	100.00	NP_391470

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
PLHLKKDO_7	27977	26841	tufA	0.0	elongation factor Tu	84.96	95.69	AHM69299
PLHLKKDO_9	11176	10307	pdxS	1.11e-151	encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS	83.79	98.31	ACE61268
PLHLKKDO_1	1500264	1499488	CodY	1.81e-124	nutrient-responsive regulator	81.08	100.00	ACJ80679
PLHLKKDO_2	363504	364073	ClpP	6.20e-99	part of proteolytic complex	81.05	97.44	BAB94595
PLHLKKDO_1	1961087	1960695	spxA1	1.43e-69	redox-responsive transcription factor	83.97	100.00	AAF21893
PLHLKKDO_1	1961087	1960695	spx	8.50e-68	essential gene which is a thiol/oxidative stress sensor	80.15	100.00	BAB57159
PLHLKKDO_8	34635	34393	SpoVG	7.49e-39	RNA-binding protein	81.48	79.41	AAT02994
PLHLKKDO_6	77302	77105	CspA	3.63e-32	cold shock protein	90.91	100.00	CAA62903