Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LCNIJAEL_74 | 4168 | 6093 | tet(W) | ARO:3000194 | tet(W) | 96.71 | 100.31 | AJ222769.3 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LCNIJAEL_74 | 4168 | 6080 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.95 | 99.64 | FN396364 |
| LCNIJAEL_38 | 6913 | 7398 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 98.97 | 64.41 | U48430 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LCNIJAEL_74 | 4168 | 6081 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.84 | 99.84 | WP_003672618.1 |
| LCNIJAEL_38 | 6916 | 7413 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | PARTIAL_CONTIG_ENDX | 94.15 | 68.40 | WP_011018369.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LCNIJAEL_39 | 25356 | 25162 | CspA | 9.75e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |