Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 2 | 8 | 8.49 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OKHLCPNJ_44 | 55148 | 56197 | clbA | ARO:3002814 | clbA | 99.71 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OKHLCPNJ_44 | 55162 | 56197 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.80 | 98.67 | KR610408 |
| OKHLCPNJ_35 | 40110 | 41486 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 86.86 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OKHLCPNJ_44 | 55151 | 56197 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 99.71 | 100.00 | WP_012116915.1 |
| OKHLCPNJ_35 | 40116 | 41486 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.43 | 99.78 | WP_003242953.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| OKHLCPNJ_25 | 358511 | 359692 | capB | 0.0 | Capsule | Immune modulation | 81.96 | 99.66 | NP_391471 |
| OKHLCPNJ_25 | 359707 | 360156 | capC | 2.11e-114 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OKHLCPNJ_31 | 31739 | 32875 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| OKHLCPNJ_20 | 4373 | 5242 | pdxS | 2.62e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.48 | 98.31 | ACE61268 |
| OKHLCPNJ_22 | 121536 | 122312 | CodY | 2.57e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| OKHLCPNJ_28 | 201753 | 202145 | spxA1 | 5.15e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| OKHLCPNJ_44 | 69739 | 69542 | CspA | 1.59e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| OKHLCPNJ_10 | 165396 | 165202 | CspD | 1.44e-27 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| OKHLCPNJ_23 | 14047 | 14241 | CspB | 1.87e-27 | cold shock protein | 84.61 | 98.48 | CAD00094 |
| OKHLCPNJ_44 | 69739 | 69545 | CspR | 2.08e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| OKHLCPNJ_36 | 9265 | 10137 | lipA (SAUSA300_0829) | 5.61e-163 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |