Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 2 | 7 | 7.35 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CPJEIFNL_3 | 367094 | 368143 | clbA | ARO:3002814 | clbA | 100.00 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CPJEIFNL_3 | 367094 | 368129 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 89.00 | 98.67 | KR610408 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CPJEIFNL_3 | 367094 | 368140 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | EXACTX | 100.00 | 100.00 | WP_012116915.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| CPJEIFNL_1 | 500256 | 501437 | capB | 0.0 | Capsule | Immune modulation | 81.96 | 99.66 | NP_391471 |
| CPJEIFNL_1 | 499792 | 500241 | capC | 1.04e-115 | Capsule | Immune modulation | 83.81 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CPJEIFNL_8 | 28199 | 27063 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| CPJEIFNL_11 | 12542 | 11673 | pdxS | 1.36e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| CPJEIFNL_2 | 333550 | 332774 | CodY | 1.25e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| CPJEIFNL_2 | 810532 | 810140 | spxA1 | 2.29e-69 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| CPJEIFNL_3 | 344716 | 344913 | CspA | 2.48e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| CPJEIFNL_4 | 149559 | 149753 | CspD | 8.80e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| CPJEIFNL_4 | 149559 | 149756 | CspB | 1.82e-27 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| CPJEIFNL_3 | 344716 | 344910 | CspR | 3.25e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| CPJEIFNL_1 | 138265 | 137393 | lipA (SAUSA300_0829) | 4.20e-162 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |