Genome ID:GCA_036945825.1 PPRS_table
 

Potential risk score of uploaded strain

ARGs VFs PGs PPRS
2288.49

CARD

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
GAAIMIBI_7218586219635clbAARO:3002814clbA99.71100.00CP006845.1

Resfinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
GAAIMIBI_7218586219621cfr(B)Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin88.8098.67KR610408
GAAIMIBI_34011041486tet(L)Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline86.86100.00X08034

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
GAAIMIBI_7218586219632clbA23S rRNA (adenine(2503)-C(8))-methyltransferase ClbABLASTX99.71100.00WP_012116915.1
GAAIMIBI_34011641486tet(L)tetracycline efflux MFS transporter Tet(L)BLASTX86.4399.78WP_003242953.1

Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
GAAIMIBI_1208564209745capB0.0CapsuleImmune modulation81.9699.66NP_391471
GAAIMIBI_1208100208549capC2.11e-114CapsuleImmune modulation83.5999.78NP_391470

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
GAAIMIBI_163186833004tufA0.0elongation factor Tu86.8195.69AHM69299
GAAIMIBI_2245025371pdxS2.67e-152encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS84.4898.31ACE61268
GAAIMIBI_9121597122373CodY2.57e-125nutrient-responsive regulator81.08100.00ACJ80679
GAAIMIBI_83690936517spxA15.15e-70redox-responsive transcription factor83.21100.00AAF21893
GAAIMIBI_7205044205241CspA1.59e-31cold shock protein90.91100.00CAA62903
GAAIMIBI_2165396165202CspD1.44e-27cold shock protein80.0098.48CAC99957
GAAIMIBI_141423314427CspB1.87e-27cold shock protein84.6198.48CAD00094
GAAIMIBI_7205044205238CspR2.08e-26cold shock protein80.0098.48AAO82613
GAAIMIBI_10165622164750lipA (SAUSA300_0829)5.61e-163lipoic acid synthetase80.8295.41ABD22039