Genome ID:GCA_037095795.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 10 | 10 | 9 | 16.76 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PCADNPNA_18 | 61079 | 62281 | blt | ARO:3003006 | blt | 98.00 | 100.00 | L32599.1 |
| PCADNPNA_18 | 44330 | 45184 | aadK | ARO:3002627 | aadK | 98.59 | 100.00 | AL009126.1 |
| PCADNPNA_6 | 41013 | 41933 | mphK | ARO:3004541 | mphK | 98.68 | 100.00 | CP010314.1 |
| PCADNPNA_12 | 40711 | 41049 | ykkC | ARO:3003063 | ykkC | 98.21 | 100.00 | AL009126.1 |
| PCADNPNA_12 | 40394 | 40711 | ykkD | ARO:3003064 | ykkD | 98.10 | 100.00 | AL009126.1 |
| PCADNPNA_6 | 27679 | 29118 | lmrB | ARO:3002813 | lmrB | 99.58 | 100.42 | JYFL01000006.1 |
| PCADNPNA_14 | 27473 | 30043 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.53 | 100.00 | AL009126.3 |
| PCADNPNA_50 | 18944 | 19537 | tmrB | ARO:3003059 | tmrB | 99.49 | 100.00 | AL009126.3 |
| PCADNPNA_42 | 5731 | 7377 | vmlR | ARO:3004476 | vmlR | 98.36 | 100.18 | NC_000964.3 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PCADNPNA_18 | 44330 | 45184 | aadK | Streptomycin | 98.83 | 100.00 | M26879 |
| PCADNPNA_6 | 41013 | 41933 | mph(K) | Spiramycin, Telithromycin | 98.05 | 100.00 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PCADNPNA_6 | 41025 | 41933 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 98.68 | 99.02 | WP_003246254.1 |
| PCADNPNA_18 | 44330 | 45181 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.59 | 100.00 | WP_003229862.1 |
| PCADNPNA_42 | 5734 | 7377 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.36 | 100.00 | WP_003234144.1 |
| PCADNPNA_13 | 40684 | 41202 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.75 | 100.00 | WP_003242546.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| PCADNPNA_1 | 29917 | 31098 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| PCADNPNA_25 | 23059 | 23844 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.49 | 100.00 | NP_391080 |
| PCADNPNA_1 | 28292 | 29434 | capA | 0.0 | Capsule | Immune modulation | 99.30 | 100.00 | NP_391469 |
| PCADNPNA_25 | 27700 | 34836 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.30 | 100.00 | NP_391076 |
| PCADNPNA_49 | 1501 | 3264 | dep/capD | 0.0 | Capsule | Immune modulation | 99.04 | 100.00 | NP_389723 |
| PCADNPNA_25 | 26742 | 27680 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.04 | 100.00 | NP_391077 |
| PCADNPNA_25 | 23870 | 25066 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.00 | 100.00 | NP_391079 |
| PCADNPNA_3 | 143949 | 144590 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 98.91 | 100.00 | NP_390062 |
| PCADNPNA_1 | 29453 | 29902 | capC | 0.0 | Capsule | Immune modulation | 98.89 | 100.00 | NP_391470 |
| PCADNPNA_25 | 25095 | 26714 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 96.73 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PCADNPNA_24 | 32051 | 33187 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| PCADNPNA_52 | 4356 | 5225 | pdxS | 1.96e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.45 | 98.31 | ACE61268 |
| PCADNPNA_2 | 93912 | 93136 | CodY | 1.99e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| PCADNPNA_34 | 4454 | 5023 | ClpP | 2.96e-100 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| PCADNPNA_21 | 41557 | 41165 | spxA1 | 4.13e-71 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| PCADNPNA_21 | 41557 | 41165 | spx | 2.46e-69 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| PCADNPNA_31 | 20607 | 20849 | SpoVG | 7.52e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| PCADNPNA_32 | 13827 | 14024 | CspA | 2.35e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| PCADNPNA_3 | 132719 | 132525 | CspD | 1.09e-28 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| PCADNPNA_37 | 14011 | 14205 | CspB | 4.23e-28 | cold shock protein | 83.08 | 98.48 | CAD00094 |