Genome ID:GCA_039728905.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 13 | 10 | 4 | 16.88 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GCPKJIJH_1 | 2595380 | 2596234 | aadK | ARO:3002627 | aadK | 98.24 | 100.00 | AL009126.1 |
| GCPKJIJH_1 | 2576710 | 2577912 | blt | ARO:3003006 | blt | 99.00 | 100.00 | L32599.1 |
| GCPKJIJH_1 | 2349595 | 2350764 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| GCPKJIJH_1 | 1371414 | 1371731 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| GCPKJIJH_1 | 1371076 | 1371414 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| GCPKJIJH_1 | 908605 | 911175 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.77 | 100.00 | AL009126.3 |
| GCPKJIJH_1 | 579397 | 581043 | vmlR | ARO:3004476 | vmlR | 98.54 | 100.18 | NC_000964.3 |
| GCPKJIJH_1 | 338258 | 338851 | tmrB | ARO:3003059 | tmrB | 100.00 | 100.00 | AL009126.3 |
| GCPKJIJH_1 | 287781 | 289214 | lmrB | ARO:3002813 | lmrB | 99.58 | 100.00 | JYFL01000006.1 |
| GCPKJIJH_1 | 274967 | 275887 | mphK | ARO:3004541 | mphK | 97.71 | 100.00 | CP010314.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GCPKJIJH_1 | 4056630 | 4058006 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 98.84 | 100.00 | X08034 |
| GCPKJIJH_1 | 2595382 | 2596234 | aadK | Streptomycin | 98.71 | 99.77 | M26879 |
| GCPKJIJH_1 | 274967 | 275887 | mph(K) | Spiramycin, Telithromycin | 97.72 | 100.00 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GCPKJIJH_1 | 4056633 | 4058006 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.69 | 100.00 | WP_003242953.1 |
| GCPKJIJH_1 | 579400 | 581043 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.54 | 100.00 | WP_003234144.1 |
| GCPKJIJH_1 | 2595383 | 2596234 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.24 | 100.00 | WP_003229862.1 |
| GCPKJIJH_1 | 274967 | 275884 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 97.71 | 100.00 | WP_003246254.1 |
| GCPKJIJH_1 | 4054159 | 4054677 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.17 | 100.00 | WP_003242546.1 |
| GCPKJIJH_1 | 2052001 | 2054598 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.60 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| GCPKJIJH_1 | 3156394 | 3157332 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.68 | 100.00 | NP_391077 |
| GCPKJIJH_1 | 3571781 | 3572962 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| GCPKJIJH_1 | 3157360 | 3158979 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.26 | 100.00 | NP_391078 |
| GCPKJIJH_1 | 3160230 | 3161015 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.24 | 100.00 | NP_391080 |
| GCPKJIJH_1 | 2148148 | 2148789 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.22 | 100.00 | NP_390062 |
| GCPKJIJH_1 | 3570156 | 3571298 | capA | 0.0 | Capsule | Immune modulation | 98.95 | 100.00 | NP_391469 |
| GCPKJIJH_1 | 3159008 | 3160204 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.91 | 100.00 | NP_391079 |
| GCPKJIJH_1 | 2005059 | 2006822 | dep/capD | 0.0 | Capsule | Immune modulation | 98.87 | 100.00 | NP_389723 |
| GCPKJIJH_1 | 3149238 | 3156374 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.82 | 100.00 | NP_391076 |
| GCPKJIJH_1 | 3571317 | 3571766 | capC | 0.0 | Capsule | Immune modulation | 98.67 | 100.00 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GCPKJIJH_1 | 132398 | 133534 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| GCPKJIJH_1 | 18665 | 19534 | pdxS | 3.03e-149 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| GCPKJIJH_1 | 1681281 | 1682057 | CodY | 3.31e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| GCPKJIJH_1 | 3422530 | 3423099 | ClpP | 2.46e-98 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |