Genome ID：GCA_039770075.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
13	10	8	18.25

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
CMNDCLCM_1	228710	229879	bmr	ARO:3003007	bmr	99.49	100.00	M33768.1
CMNDCLCM_10	125403	125720	ykkD	ARO:3003064	ykkD	99.05	100.00	AL009126.1
CMNDCLCM_10	125065	125403	ykkC	ARO:3003063	ykkC	100.00	100.00	AL009126.1
CMNDCLCM_31	110632	111225	tmrB	ARO:3003059	tmrB	100.00	100.00	AL009126.3
CMNDCLCM_28	79666	82236	Bacillus subtilis mprF	ARO:3003324	Bsub_mprF	99.88	100.00	AL009126.3
CMNDCLCM_2	76648	78276	vmlR	ARO:3004476	vmlR	99.08	99.09	NC_000964.3
CMNDCLCM_31	60107	61546	lmrB	ARO:3002813	lmrB	99.16	100.42	JYFL01000006.1
CMNDCLCM_31	47292	48158	mphK	ARO:3004541	mphK	98.61	94.12	CP010314.1
CMNDCLCM_54	10028	10882	aadK	ARO:3002627	aadK	98.94	100.00	AL009126.1
CMNDCLCM_1	6937	8139	blt	ARO:3003006	blt	99.25	100.00	L32599.1

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
CMNDCLCM_54	10028	10880	aadK	Streptomycin	98.94	99.77	M26879
CMNDCLCM_11	155821	157197	tet(L)	Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline	98.91	100.00	D12567
CMNDCLCM_31	47292	48212	mph(K)	Spiramycin, Telithromycin	98.05	100.00	NC_000964

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
CMNDCLCM_2	76651	78276	vmlR	ABC-F type ribosomal protection protein VmlR	BLASTX	99.08	98.90	WP_003234144.1
CMNDCLCM_54	10028	10879	aadK	aminoglycoside 6-adenylyltransferase AadK	BLASTX	98.94	100.00	WP_003229862.1
CMNDCLCM_11	155824	157197	tet(L)	tetracycline efflux MFS transporter Tet(L)	BLASTX	98.91	100.00	WP_063856081.1
CMNDCLCM_31	47292	48209	mphK	macrolide 2'-phosphotransferase MphK	INTERNAL_STOP	98.04	100.00	WP_003246254.1
CMNDCLCM_11	153350	153868	satA	streptothricin N-acetyltransferase SatA	BLASTX	90.17	100.00	WP_003242546.1
CMNDCLCM_30	23517	26105	rphC	rifamycin-inactivating phosphotransferase RphC	BLASTX	80.37	100.00	WP_087347987.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
CMNDCLCM_22	15963	16748	dhbA	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391080
CMNDCLCM_22	20604	27740	dhbF	0.0	Bacillibactin	Nutritional/Metabolic factor	99.99	100.00	NP_391076
CMNDCLCM_22	19646	20584	dhbB	0.0	Bacillibactin	Nutritional/Metabolic factor	99.89	100.00	NP_391077
CMNDCLCM_4	37109	38290	capB	0.0	Capsule	Immune modulation	99.75	100.00	NP_391471
CMNDCLCM_22	17999	19618	dhbE	0.0	Bacillibactin	Nutritional/Metabolic factor	99.57	100.00	NP_391078
CMNDCLCM_4	36645	37094	capC	0.0	Capsule	Immune modulation	99.56	100.00	NP_391470
CMNDCLCM_22	16774	17970	dhbC	0.0	Bacillibactin	Nutritional/Metabolic factor	99.50	100.00	NP_391079
CMNDCLCM_42	60811	61452	hlyIII	0.0	Hemolysin III	Exotoxin	99.22	100.00	NP_390062
CMNDCLCM_4	35484	36626	capA	0.0	Capsule	Immune modulation	99.21	100.00	NP_391469
CMNDCLCM_25	6561	8324	dep/capD	0.0	Capsule	Immune modulation	98.92	100.00	NP_389723

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
CMNDCLCM_16	31659	32795	tufA	0.0	elongation factor Tu	84.96	95.69	AHM69299
CMNDCLCM_60	4251	5120	pdxS	1.10e-151	encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS	83.79	98.31	ACE61268
CMNDCLCM_6	249434	248658	CodY	2.94e-125	nutrient-responsive regulator	81.08	100.00	ACJ80679
CMNDCLCM_17	174055	174624	ClpP	1.75e-99	part of proteolytic complex	81.05	97.44	BAB94595
CMNDCLCM_26	21682	21290	spxA1	3.92e-71	redox-responsive transcription factor	83.97	100.00	AAF21893
CMNDCLCM_26	21682	21290	spx	2.34e-69	essential gene which is a thiol/oxidative stress sensor	80.15	100.00	BAB57159
CMNDCLCM_24	34595	34353	SpoVG	7.48e-39	RNA-binding protein	81.48	79.41	AAT02994
CMNDCLCM_2	23726	23923	CspA	4.64e-32	cold shock protein	90.91	100.00	CAA62903
CMNDCLCM_12	38020	38214	CspB	5.64e-28	cold shock protein	83.08	98.48	CAD00094