Genome ID:GCA_040270045.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 9 | 10 | 8 | 15.65 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OPMDHAHO_89 | 51725 | 52579 | aadK | ARO:3002627 | aadK | 98.24 | 100.00 | AL009126.1 |
| OPMDHAHO_112 | 39161 | 41731 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.88 | 100.00 | AL009126.3 |
| OPMDHAHO_101 | 25318 | 26757 | lmrB | ARO:3002813 | lmrB | 98.74 | 100.42 | JYFL01000006.1 |
| OPMDHAHO_137 | 22792 | 23109 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| OPMDHAHO_137 | 22454 | 22792 | ykkC | ARO:3003063 | ykkC | 99.11 | 100.00 | AL009126.1 |
| OPMDHAHO_171 | 9512 | 10105 | tmrB | ARO:3003059 | tmrB | 97.97 | 100.00 | AL009126.3 |
| OPMDHAHO_15 | 1863 | 3494 | vmlR | ARO:3004476 | vmlR | 97.97 | 99.27 | NC_000964.3 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OPMDHAHO_89 | 51725 | 52579 | aadK | Streptomycin | 98.71 | 100.00 | M26879 |
| OPMDHAHO_101 | 12506 | 13425 | mph(K) | Spiramycin, Telithromycin | 97.83 | 99.89 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OPMDHAHO_89 | 51725 | 52576 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.24 | 100.00 | WP_003229862.1 |
| OPMDHAHO_15 | 1863 | 3506 | vmlR | ABC-F type ribosomal protection protein VmlR | INTERNAL_STOP | 97.08 | 100.00 | WP_003234144.1 |
| OPMDHAHO_135 | 72214 | 72732 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 91.91 | 100.00 | WP_003242546.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| OPMDHAHO_125 | 28942 | 30123 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| OPMDHAHO_125 | 30606 | 31748 | capA | 0.0 | Capsule | Immune modulation | 99.65 | 100.00 | NP_391469 |
| OPMDHAHO_125 | 30138 | 30587 | capC | 0.0 | Capsule | Immune modulation | 99.56 | 100.00 | NP_391470 |
| OPMDHAHO_100 | 39219 | 39860 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.53 | 100.00 | NP_390062 |
| OPMDHAHO_146 | 30151 | 30936 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.36 | 100.00 | NP_391080 |
| OPMDHAHO_143 | 19284 | 21047 | dep/capD | 0.0 | Capsule | Immune modulation | 99.04 | 100.00 | NP_389723 |
| OPMDHAHO_146 | 33823 | 34761 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.72 | 100.00 | NP_391077 |
| OPMDHAHO_146 | 30962 | 32158 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.58 | 100.00 | NP_391079 |
| OPMDHAHO_146 | 34781 | 41917 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.05 | 100.00 | NP_391076 |
| OPMDHAHO_146 | 32176 | 33795 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.41 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OPMDHAHO_96 | 31740 | 32876 | tufA | 0.0 | elongation factor Tu | 85.75 | 95.69 | AHM69299 |
| OPMDHAHO_159 | 4266 | 5135 | pdxS | 1.10e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| OPMDHAHO_2 | 18975 | 19751 | CodY | 5.86e-126 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| OPMDHAHO_168 | 50894 | 51463 | ClpP | 4.38e-100 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| OPMDHAHO_46 | 40087 | 40479 | spxA1 | 4.20e-71 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| OPMDHAHO_46 | 40087 | 40479 | spx | 2.50e-69 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| OPMDHAHO_104 | 20499 | 20741 | SpoVG | 7.49e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| OPMDHAHO_100 | 51824 | 52018 | CspD | 3.44e-29 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| OPMDHAHO_157 | 29179 | 28985 | CspB | 6.83e-28 | cold shock protein | 83.08 | 98.48 | CAD00094 |