Genome ID：GCA_040571395.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
15	10	4	18.47

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
CFAIHACE_1	3923914	3924834	mphK	ARO:3004541	mphK	100.00	100.00	CP010314.1
CFAIHACE_1	3910586	3912019	lmrB	ARO:3002813	lmrB	100.00	100.00	JYFL01000006.1
CFAIHACE_1	3869719	3870471	ANT(9)-Ib	ARO:3007401	ANT(9)-Ib	99.60	98.04	M69221.1
CFAIHACE_1	3291059	3291913	aadK	ARO:3002627	aadK	100.00	100.00	AL009126.1
CFAIHACE_1	3272350	3273552	blt	ARO:3003006	blt	100.00	100.00	L32599.1
CFAIHACE_1	3050045	3051214	bmr	ARO:3003007	bmr	99.74	100.00	M33768.1
CFAIHACE_1	2077415	2077732	ykkD	ARO:3003064	ykkD	100.00	100.00	AL009126.1
CFAIHACE_1	2077077	2077415	ykkC	ARO:3003063	ykkC	100.00	100.00	AL009126.1
CFAIHACE_1	1617335	1619905	Bacillus subtilis mprF	ARO:3003324	Bsub_mprF	100.00	100.00	AL009126.3
CFAIHACE_1	1305292	1306935	vmlR	ARO:3004476	vmlR	100.00	100.00	NC_000964.3
CFAIHACE_1	1076685	1077278	tmrB	ARO:3003059	tmrB	100.00	100.00	AL009126.3
CFAIHACE_1	1065080	1065730	Streptococcus suis chloramphenicol acetyltransferase	ARO:3004455	Ssui_ACT_CHL	94.91	100.00	AB080798.1

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
CFAIHACE_1	3291059	3291913	aadK	Streptomycin	100.00	100.00	M26879
CFAIHACE_1	3869719	3870486	ant(9)-Ia	Spectinomycin	100.00	100.00	M69221
CFAIHACE_1	1065080	1065730	cat(pC194)	Chloramphenicol	100.00	100.00	NC_002013
CFAIHACE_1	3923914	3924834	mph(K)	Spiramycin, Telithromycin	100.00	100.00	NC_000964
CFAIHACE_1	186971	188347	tet(L)	Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline	100.00	100.00	X08034

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
CFAIHACE_1	3291062	3291913	aadK	aminoglycoside 6-adenylyltransferase AadK	EXACTX	100.00	100.00	WP_003229862.1
CFAIHACE_1	3869722	3870486	ant(9)-Ib	aminoglycoside nucleotidyltransferase ANT(9)-Ib	EXACTX	100.00	100.00	WP_063840673.1
CFAIHACE_1	1065080	1065727	catA	type A-9 chloramphenicol O-acetyltransferase	EXACTX	100.00	100.00	WP_001010387.1
CFAIHACE_1	3923917	3924834	mphK	macrolide 2'-phosphotransferase MphK	EXACTX	100.00	100.00	WP_003246254.1
CFAIHACE_1	190347	190865	satA	streptothricin N-acetyltransferase SatA	EXACTX	100.00	100.00	WP_003242546.1
CFAIHACE_1	186971	188344	tet(L)	tetracycline efflux MFS transporter Tet(L)	EXACTX	100.00	100.00	WP_003242953.1
CFAIHACE_1	1305295	1306935	vmlR	ABC-F type ribosomal protection protein VmlR	EXACTX	100.00	100.00	WP_003234144.1
CFAIHACE_1	2741113	2743707	rphC	rifamycin-inactivating phosphotransferase RphC	BLASTX	81.15	99.88	WP_087347987.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
CFAIHACE_1	677064	678206	capA	0.0	Capsule	Immune modulation	100.00	100.00	NP_391469
CFAIHACE_1	675400	676581	capB	0.0	Capsule	Immune modulation	100.00	100.00	NP_391471
CFAIHACE_1	676596	677045	capC	0.0	Capsule	Immune modulation	100.00	100.00	NP_391470
CFAIHACE_1	2694455	2696218	dep/capD	0.0	Capsule	Immune modulation	100.00	100.00	NP_389723
CFAIHACE_1	3846889	3847674	dhbA	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391080
CFAIHACE_1	3843053	3843991	dhbB	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391077
CFAIHACE_1	3845667	3846863	dhbC	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391079
CFAIHACE_1	3844019	3845638	dhbE	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391078
CFAIHACE_1	3835897	3843033	dhbF	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391076
CFAIHACE_1	2850678	2851319	hlyIII	0.0	Hemolysin III	Exotoxin	100.00	100.00	NP_390062

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
CFAIHACE_1	27923	26787	tufA	0.0	elongation factor Tu	84.96	95.69	AHM69299
CFAIHACE_1	141348	140479	pdxS	3.00e-149	encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS	83.79	98.31	ACE61268
CFAIHACE_1	2390680	2391456	CodY	3.28e-124	nutrient-responsive regulator	81.08	100.00	ACJ80679
CFAIHACE_1	829793	829224	ClpP	2.43e-98	part of proteolytic complex	81.05	97.44	BAB94595