Genome ID：GCA_041053155.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
18	10	4	20.98

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
DHJILCDG_1	3004314	3005168	aadK	ARO:3002627	aadK	100.00	100.00	AL009126.1
DHJILCDG_1	2985605	2986807	blt	ARO:3003006	blt	100.00	100.00	L32599.1
DHJILCDG_1	2763288	2764457	bmr	ARO:3003007	bmr	99.74	100.00	M33768.1
DHJILCDG_1	1645488	1645805	ykkD	ARO:3003064	ykkD	100.00	100.00	AL009126.1
DHJILCDG_1	1645150	1645488	ykkC	ARO:3003063	ykkC	100.00	100.00	AL009126.1
DHJILCDG_1	1525678	1526868	tet(C)	ARO:3000167	tet(C)	100.00	100.00	AY043299.1
DHJILCDG_1	1524145	1524882	ErmB	ARO:3000375	ErmB	98.78	98.79	AF242872.1
DHJILCDG_1	1522805	1523665	TEM-1	ARO:3000873	TEM-1	100.00	100.00	AL513383.1
DHJILCDG_1	1261616	1262353	ErmB	ARO:3000375	ErmB	98.78	98.79	AF242872.1
DHJILCDG_1	1260276	1261136	TEM-1	ARO:3000873	TEM-1	100.00	100.00	AL513383.1
DHJILCDG_1	916778	919348	Bacillus subtilis mprF	ARO:3003324	Bsub_mprF	100.00	100.00	AL009126.3
DHJILCDG_1	604736	606379	vmlR	ARO:3004476	vmlR	100.00	100.00	NC_000964.3
DHJILCDG_1	339156	339749	tmrB	ARO:3003059	tmrB	100.00	100.00	AL009126.3
DHJILCDG_1	288653	290086	lmrB	ARO:3002813	lmrB	100.00	100.00	JYFL01000006.1
DHJILCDG_1	275838	276758	mphK	ARO:3004541	mphK	100.00	100.00	CP010314.1

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
DHJILCDG_1	3004314	3005168	aadK	Streptomycin	100.00	100.00	M26879
DHJILCDG_1	1260276	1261136	blaTEM-1A	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	100.00	100.00	HM749966
DHJILCDG_1	1261616	1262353	erm(B)	Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S	100.00	100.00	U18931
DHJILCDG_1	275838	276758	mph(K)	Spiramycin, Telithromycin	100.00	100.00	NC_000964
DHJILCDG_1	4456313	4457689	tet(L)	Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline	100.00	100.00	X08034
DHJILCDG_1	1525678	1526868	tet(C)	Doxycycline, Tetracycline	99.92	100.00	AF055345

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
DHJILCDG_1	3004317	3005168	aadK	aminoglycoside 6-adenylyltransferase AadK	EXACTX	100.00	100.00	WP_003229862.1
DHJILCDG_1	1260279	1261136	blaTEM-1	broad-spectrum class A beta-lactamase TEM-1	ALLELEX	100.00	100.00	WP_000027057.1
DHJILCDG_1	1522808	1523665	blaTEM-1	broad-spectrum class A beta-lactamase TEM-1	ALLELEX	100.00	100.00	WP_000027057.1
DHJILCDG_1	1261616	1262350	erm(B)	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	EXACTX	100.00	100.00	WP_002292226.1
DHJILCDG_1	1524145	1524879	erm(B)	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	EXACTX	100.00	100.00	WP_002292226.1
DHJILCDG_1	275838	276755	mphK	macrolide 2'-phosphotransferase MphK	EXACTX	100.00	100.00	WP_003246254.1
DHJILCDG_1	4453795	4454313	satA	streptothricin N-acetyltransferase SatA	EXACTX	100.00	100.00	WP_003242546.1
DHJILCDG_1	1525678	1526865	tet(C)	tetracycline efflux MFS transporter Tet(C)	EXACTX	100.00	100.00	WP_001297013.1
DHJILCDG_1	4456316	4457689	tet(L)	tetracycline efflux MFS transporter Tet(L)	EXACTX	100.00	100.00	WP_003242953.1
DHJILCDG_1	604739	606379	vmlR	ABC-F type ribosomal protection protein VmlR	EXACTX	100.00	100.00	WP_003234144.1
DHJILCDG_1	2319967	2322561	rphC	rifamycin-inactivating phosphotransferase RphC	BLASTX	81.15	99.88	WP_087347987.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
DHJILCDG_1	3966453	3967595	capA	0.0	Capsule	Immune modulation	100.00	100.00	NP_391469
DHJILCDG_1	3968078	3969259	capB	0.0	Capsule	Immune modulation	100.00	100.00	NP_391471
DHJILCDG_1	3967614	3968063	capC	0.0	Capsule	Immune modulation	100.00	100.00	NP_391470
DHJILCDG_1	2273309	2275072	dep/capD	0.0	Capsule	Immune modulation	100.00	100.00	NP_389723
DHJILCDG_1	3560143	3560928	dhbA	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391080
DHJILCDG_1	3556307	3557245	dhbB	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391077
DHJILCDG_1	3558921	3560117	dhbC	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391079
DHJILCDG_1	3557273	3558892	dhbE	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391078
DHJILCDG_1	3549151	3556287	dhbF	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391076
DHJILCDG_1	2563934	2564575	hlyIII	0.0	Hemolysin III	Exotoxin	100.00	100.00	NP_390062

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
DHJILCDG_1	132882	134018	tufA	0.0	elongation factor Tu	84.96	95.69	AHM69299
DHJILCDG_1	19074	19943	pdxS	3.33e-149	encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS	83.79	98.31	ACE61268
DHJILCDG_1	1958752	1959528	CodY	3.64e-124	nutrient-responsive regulator	81.08	100.00	ACJ80679
DHJILCDG_1	3814866	3815435	ClpP	2.70e-98	part of proteolytic complex	81.05	97.44	BAB94595